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ENCSR428WVZ

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against DICER1. (DICER1-BGHcLV16)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of DICER1 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DICER1

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against DICER1. (DICER1-BGHcLV16)

Analysis

View Data Processing
Analysis page is available for ENCSR428WVZ.

ENCODE Metadata

Total file size: 42.7 GB
Assay: CRISPR RNA-seq
Target: DICER1
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DICER1
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF809SPS ENCFF809SPS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF999OGU ENCFF999OGU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.2 GB link
ENCFF166KLI ENCFF166KLI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.6 GB link
ENCFF579TMA ENCFF579TMA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.4 GB link
ENCFF381DEF ENCFF381DEF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 122.1 MB link
ENCFF698PWP ENCFF698PWP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 128.7 MB link
ENCFF056DPZ ENCFF056DPZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 109.5 MB link
ENCFF733QMC ENCFF733QMC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 115.1 MB link
ENCFF237LXV ENCFF237LXV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 130.9 MB link
ENCFF774KCZ ENCFF774KCZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 124.2 MB link
ENCFF111NBB ENCFF111NBB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 112.3 MB link
ENCFF612BIB ENCFF612BIB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 118.0 MB link
ENCFF048JFN ENCFF048JFN.fastq fastq (reads) reads 2.5 GB link
ENCFF136CKK ENCFF136CKK.fastq fastq (reads) reads 2.8 GB link
ENCFF632DVV ENCFF632DVV.fastq fastq (reads) reads 2.6 GB link
ENCFF698UZM ENCFF698UZM.fastq fastq (reads) reads 2.7 GB link
ENCFF143PEW ENCFF143PEW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF191JKP ENCFF191JKP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF038FTA ENCFF038FTA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF636JNH ENCFF636JNH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF717SOR ENCFF717SOR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF973KDV ENCFF973KDV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link