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ENCSR234FWR

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against RPL28. (RPL28-BGKcLV15)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RPL28 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RPL28

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against RPL28. (RPL28-BGKcLV15)

Analysis

View Data Processing
Analysis page is available for ENCSR234FWR.

ENCODE Metadata

Total file size: 70.4 GB
Assay: CRISPR RNA-seq
Target: RPL28
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RPL28
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF009XWG ENCFF009XWG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.8 GB link
ENCFF966DYJ ENCFF966DYJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 13.5 GB link
ENCFF305RBO ENCFF305RBO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 26.4 GB link
ENCFF933LMV ENCFF933LMV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.0 GB link
ENCFF222ZSI ENCFF222ZSI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 221.9 MB link
ENCFF838AKK ENCFF838AKK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 114.8 MB link
ENCFF324RET ENCFF324RET.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 194.0 MB link
ENCFF480ISV ENCFF480ISV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 101.1 MB link
ENCFF428TJF ENCFF428TJF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 224.4 MB link
ENCFF781ZLV ENCFF781ZLV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 115.9 MB link
ENCFF205QRS ENCFF205QRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 197.8 MB link
ENCFF557HTN ENCFF557HTN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 103.1 MB link
ENCFF377XYQ ENCFF377XYQ.fastq fastq (reads) reads 7.0 GB link
ENCFF769KCN ENCFF769KCN.fastq fastq (reads) reads 2.0 GB link
ENCFF775WYI ENCFF775WYI.fastq fastq (reads) reads 7.5 GB link
ENCFF945JZG ENCFF945JZG.fastq fastq (reads) reads 1.9 GB link
ENCFF061YQJ ENCFF061YQJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF421QRM ENCFF421QRM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF380VVI ENCFF380VVI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.1 MB link
ENCFF438PDD ENCFF438PDD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.7 MB link
ENCFF561XBV ENCFF561XBV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF728TXB ENCFF728TXB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link