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ENCSR990DKW

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against MORC2. (MORC2-BGKcLV19)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of MORC2 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens MORC2

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against MORC2. (MORC2-BGKcLV19)

Analysis

View Data Processing
Analysis page is available for ENCSR990DKW.

ENCODE Metadata

Total file size: 37.5 GB
Assay: CRISPR RNA-seq
Target: MORC2
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens MORC2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF148NQB ENCFF148NQB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF331TSX ENCFF331TSX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.5 GB link
ENCFF725RNZ ENCFF725RNZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.9 GB link
ENCFF960IUW ENCFF960IUW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.2 GB link
ENCFF269YQM ENCFF269YQM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 128.5 MB link
ENCFF835LRA ENCFF835LRA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 121.0 MB link
ENCFF068GWD ENCFF068GWD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 105.8 MB link
ENCFF874YCD ENCFF874YCD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 113.5 MB link
ENCFF572VRM ENCFF572VRM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 130.0 MB link
ENCFF905SPH ENCFF905SPH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 122.5 MB link
ENCFF467ZGM ENCFF467ZGM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 116.0 MB link
ENCFF516KZU ENCFF516KZU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 108.1 MB link
ENCFF037PTG ENCFF037PTG.fastq fastq (reads) reads 2.4 GB link
ENCFF074DWR ENCFF074DWR.fastq fastq (reads) reads 2.6 GB link
ENCFF330WER ENCFF330WER.fastq fastq (reads) reads 2.4 GB link
ENCFF722YZF ENCFF722YZF.fastq fastq (reads) reads 2.6 GB link
ENCFF178EKP ENCFF178EKP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF478BRM ENCFF478BRM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF361GXC ENCFF361GXC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.0 MB link
ENCFF671QWC ENCFF671QWC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF873EAE ENCFF873EAE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF986WBI ENCFF986WBI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link