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ENCSR060SLE

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against BRIX1. (BRIX1-BGHcLV24)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of BRIX1 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens BRIX1

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against BRIX1. (BRIX1-BGHcLV24)

Analysis

View Data Processing
Analysis page is available for ENCSR060SLE.

ENCODE Metadata

Total file size: 44.1 GB
Assay: CRISPR RNA-seq
Target: BRIX1
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens BRIX1
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF659KHQ ENCFF659KHQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.1 GB link
ENCFF970WLW ENCFF970WLW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.6 GB link
ENCFF193KAT ENCFF193KAT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.2 GB link
ENCFF483WOU ENCFF483WOU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.9 GB link
ENCFF083PYI ENCFF083PYI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 135.9 MB link
ENCFF666NTD ENCFF666NTD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 125.1 MB link
ENCFF037VDC ENCFF037VDC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 111.7 MB link
ENCFF943XBX ENCFF943XBX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 121.8 MB link
ENCFF408RQM ENCFF408RQM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 127.0 MB link
ENCFF435MYC ENCFF435MYC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 137.8 MB link
ENCFF190QOW ENCFF190QOW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 124.8 MB link
ENCFF317FEE ENCFF317FEE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 114.5 MB link
ENCFF055BAY ENCFF055BAY.fastq fastq (reads) reads 2.6 GB link
ENCFF123XAQ ENCFF123XAQ.fastq fastq (reads) reads 2.7 GB link
ENCFF144CPS ENCFF144CPS.fastq fastq (reads) reads 2.9 GB link
ENCFF203IOB ENCFF203IOB.fastq fastq (reads) reads 2.8 GB link
ENCFF340MAK ENCFF340MAK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF860YWH ENCFF860YWH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF002LOC ENCFF002LOC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF167UDP ENCFF167UDP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF629TDL ENCFF629TDL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF778PUR ENCFF778PUR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link