ENCSR549PMM
ENCSR ENCODEeCLIP control experiment on HepG2 against SNRNP200
Organism:
Homo sapiens
Experiment Types:
Control eCLIP
Status:
archived
Contact:
Gene Yeo, UCSD
Summary
Control eCLIP of in Homo sapiens HepG2
Overall Design
eCLIP control experiment on HepG2 against SNRNP200
Analysis
View Data Processing
Analysis page is available for ENCSR549PMM.
ENCODE Metadata
Total file size: 5.0 GBAssay: Control eCLIP
Biosample: Homo sapiens HepG2
Files: 12
Unique ENC file IDs: 12
File Formats
bam (4)
bigWig (4)
fastq (2)
tsv (2)
Output types (6)
alignments (2)
minus strand signal of unique reads (2)
plus strand signal of unique reads (2)
reads (2)
transcript quantifications (2)
unfiltered alignments (2)
Data Files (12)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF566JCT | ENCFF566JCT.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 299.2 MB | link | |
| ENCFF601BXZ | ENCFF601BXZ.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 378.7 MB | link | |
| ENCFF143RPM | ENCFF143RPM.bam | bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 | unfiltered alignments | GRCh38 | 972.4 MB | link | |
| ENCFF593JCG | ENCFF593JCG.bam | bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 | unfiltered alignments | GRCh38 | 779.7 MB | link | |
| ENCFF858KIB | ENCFF858KIB.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 33.4 MB | link | |
| ENCFF988TER | ENCFF988TER.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 26.5 MB | link | |
| ENCFF488KIB | ENCFF488KIB.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 26.8 MB | link | |
| ENCFF534TWM | ENCFF534TWM.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 33.5 MB | link | |
| ENCFF306XZM | ENCFF306XZM.fastq | fastq (reads) | reads | 1.4 GB | link | ||
| ENCFF677GTJ | ENCFF677GTJ.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF445UBT | ENCFF445UBT.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 43.9 MB | link | |
| ENCFF769HUF | ENCFF769HUF.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 34.4 MB | link |