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ENCSR220DTX

ENCSR ENCODE
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Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV28)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens K562 genetically modified (deletion) using CRISPR

Overall Design

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV28)

Analysis

View Data Processing
Analysis page is available for ENCSR220DTX.

ENCODE Metadata

Total file size: 29.1 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF494IOL ENCFF494IOL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.8 GB link
ENCFF798BMY ENCFF798BMY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.7 GB link
ENCFF273AJI ENCFF273AJI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.5 GB link
ENCFF875OLF ENCFF875OLF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.6 GB link
ENCFF366OPO ENCFF366OPO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 118.1 MB link
ENCFF507UKJ ENCFF507UKJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 119.2 MB link
ENCFF259YOX ENCFF259YOX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 108.5 MB link
ENCFF475GTX ENCFF475GTX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 106.4 MB link
ENCFF230PCO ENCFF230PCO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 121.8 MB link
ENCFF742OMR ENCFF742OMR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 120.4 MB link
ENCFF164JXP ENCFF164JXP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 109.4 MB link
ENCFF665CNK ENCFF665CNK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 111.8 MB link
ENCFF004JQI ENCFF004JQI.fastq fastq (reads) reads 1.8 GB link
ENCFF241JYN ENCFF241JYN.fastq fastq (reads) reads 2.0 GB link
ENCFF522GAP ENCFF522GAP.fastq fastq (reads) reads 1.9 GB link
ENCFF923YTY ENCFF923YTY.fastq fastq (reads) reads 1.9 GB link
ENCFF191PYC ENCFF191PYC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF407HJZ ENCFF407HJZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF116UHV ENCFF116UHV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF221PVS ENCFF221PVS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF378TYG ENCFF378TYG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF747NYR ENCFF747NYR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link