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ENCSR439TMT

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against RYBP. (RYBP-BGHcLV20)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RYBP in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens RYBP

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against RYBP. (RYBP-BGHcLV20)

Analysis

View Data Processing
Analysis page is available for ENCSR439TMT.

ENCODE Metadata

Total file size: 42.3 GB
Assay: CRISPR RNA-seq
Target: RYBP
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens RYBP
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF120LSZ ENCFF120LSZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.0 GB link
ENCFF358HBZ ENCFF358HBZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.5 GB link
ENCFF028ORI ENCFF028ORI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.8 GB link
ENCFF169DSP ENCFF169DSP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 11.0 GB link
ENCFF139FEK ENCFF139FEK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 109.3 MB link
ENCFF408XAQ ENCFF408XAQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 109.4 MB link
ENCFF026NTL ENCFF026NTL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 98.2 MB link
ENCFF188NEC ENCFF188NEC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 98.4 MB link
ENCFF192BAN ENCFF192BAN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 111.1 MB link
ENCFF854QWD ENCFF854QWD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 111.4 MB link
ENCFF347KNE ENCFF347KNE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 101.1 MB link
ENCFF848KPD ENCFF848KPD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 100.6 MB link
ENCFF295CWD ENCFF295CWD.fastq fastq (reads) reads 3.0 GB link
ENCFF402CUS ENCFF402CUS.fastq fastq (reads) reads 2.9 GB link
ENCFF864UBU ENCFF864UBU.fastq fastq (reads) reads 2.6 GB link
ENCFF903MWV ENCFF903MWV.fastq fastq (reads) reads 2.6 GB link
ENCFF567NUD ENCFF567NUD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF717MCL ENCFF717MCL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF472XSI ENCFF472XSI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF479WYD ENCFF479WYD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF826DJK ENCFF826DJK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF872QFY ENCFF872QFY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link