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ENCSR682DZY

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against SUZ12. (SUZ12-BGKcLV17)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of SUZ12 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens SUZ12

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against SUZ12. (SUZ12-BGKcLV17)

Analysis

View Data Processing
Analysis page is available for ENCSR682DZY.

ENCODE Metadata

Total file size: 43.8 GB
Assay: CRISPR RNA-seq
Target: SUZ12
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens SUZ12
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF546BGZ ENCFF546BGZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.5 GB link
ENCFF745GVY ENCFF745GVY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.8 GB link
ENCFF763IKH ENCFF763IKH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 11.5 GB link
ENCFF965BHM ENCFF965BHM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.8 GB link
ENCFF409GYJ ENCFF409GYJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 137.9 MB link
ENCFF565XIR ENCFF565XIR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 130.9 MB link
ENCFF221MEO ENCFF221MEO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 121.6 MB link
ENCFF535NGL ENCFF535NGL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 116.8 MB link
ENCFF442IBD ENCFF442IBD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 140.0 MB link
ENCFF843ZHN ENCFF843ZHN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 132.8 MB link
ENCFF511JPD ENCFF511JPD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 124.5 MB link
ENCFF606ULU ENCFF606ULU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 119.6 MB link
ENCFF491IAL ENCFF491IAL.fastq fastq (reads) reads 2.6 GB link
ENCFF500XLE ENCFF500XLE.fastq fastq (reads) reads 3.1 GB link
ENCFF539TDD ENCFF539TDD.fastq fastq (reads) reads 2.9 GB link
ENCFF648BHR ENCFF648BHR.fastq fastq (reads) reads 2.5 GB link
ENCFF416FXC ENCFF416FXC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF946NTP ENCFF946NTP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF201ZDE ENCFF201ZDE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF456EOV ENCFF456EOV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF864OGS ENCFF864OGS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF920PTI ENCFF920PTI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link