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ENCSR260BQC

ENCSR ENCODE
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Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-C)

Organism: Homo sapiens
Experiment Types:
shRNA RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

shRNA RNA-seq of in Homo sapiens K562 expressing RNAi

Overall Design

Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-C)

Analysis

View Data Processing
Analysis page is available for ENCSR260BQC.

ENCODE Metadata

Total file size: 21.6 GB
Assay: shRNA RNA-seq
Biosample: Homo sapiens K562 expressing RNAi
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF059NNE ENCFF059NNE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.4 GB link
ENCFF607DWM ENCFF607DWM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.6 GB link
ENCFF022TRZ ENCFF022TRZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 3.5 GB link
ENCFF087QNU ENCFF087QNU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.6 GB link
ENCFF402VNC ENCFF402VNC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 77.0 MB link
ENCFF412EPG ENCFF412EPG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 94.1 MB link
ENCFF700MGE ENCFF700MGE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 82.8 MB link
ENCFF847TVP ENCFF847TVP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 66.5 MB link
ENCFF493SCU ENCFF493SCU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 95.3 MB link
ENCFF621TTB ENCFF621TTB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 77.7 MB link
ENCFF064SGU ENCFF064SGU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 84.8 MB link
ENCFF404VIA ENCFF404VIA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 67.9 MB link
ENCFF204IKW ENCFF204IKW.fastq fastq (reads) reads 1.9 GB link
ENCFF475HIX ENCFF475HIX.fastq fastq (reads) reads 1.4 GB link
ENCFF687PMR ENCFF687PMR.fastq fastq (reads) reads 1.9 GB link
ENCFF860QVJ ENCFF860QVJ.fastq fastq (reads) reads 1.4 GB link
ENCFF416LPZ ENCFF416LPZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF767DNH ENCFF767DNH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF204NXW ENCFF204NXW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF404REP ENCFF404REP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF549FYG ENCFF549FYG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF649OJK ENCFF649OJK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link