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ENCSR918MUU

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against CNOT2. (CNOT2-BGHcLV24)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of CNOT2 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens CNOT2

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against CNOT2. (CNOT2-BGHcLV24)

Analysis

View Data Processing
Analysis page is available for ENCSR918MUU.

ENCODE Metadata

Total file size: 42.7 GB
Assay: CRISPR RNA-seq
Target: CNOT2
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens CNOT2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF775DBL ENCFF775DBL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.4 GB link
ENCFF850NJY ENCFF850NJY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.8 GB link
ENCFF398TVF ENCFF398TVF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 11.0 GB link
ENCFF647KUQ ENCFF647KUQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.6 GB link
ENCFF834CPR ENCFF834CPR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 128.2 MB link
ENCFF932DYJ ENCFF932DYJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 132.4 MB link
ENCFF083UWZ ENCFF083UWZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 119.8 MB link
ENCFF850UPY ENCFF850UPY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 115.0 MB link
ENCFF395KRH ENCFF395KRH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 130.7 MB link
ENCFF445ZRW ENCFF445ZRW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 134.8 MB link
ENCFF225WZU ENCFF225WZU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 118.3 MB link
ENCFF983YFK ENCFF983YFK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 123.1 MB link
ENCFF006NJF ENCFF006NJF.fastq fastq (reads) reads 2.9 GB link
ENCFF093UMS ENCFF093UMS.fastq fastq (reads) reads 2.5 GB link
ENCFF333TOF ENCFF333TOF.fastq fastq (reads) reads 2.5 GB link
ENCFF379YWQ ENCFF379YWQ.fastq fastq (reads) reads 2.8 GB link
ENCFF469MLR ENCFF469MLR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF970KFL ENCFF970KFL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF029EXR ENCFF029EXR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF143RGN ENCFF143RGN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF211GNF ENCFF211GNF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF417OCH ENCFF417OCH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link