ENCSR554GSW
ENCSR ENCODEeCLIP experiment on HepG2 against APEX1
Organism:
Homo sapiens
Experiment Types:
eCLIP
Status:
archived
Contact:
Gene Yeo, UCSD
Relations
Summary
eCLIP of APEX1 in Homo sapiens HepG2
Overall Design
eCLIP experiment on HepG2 against APEX1
Analysis
View Data Processing
Analysis page is available for ENCSR554GSW.
ENCODE Metadata
Total file size: 2.8 GBAssay: eCLIP
Target: APEX1
Biosample: Homo sapiens HepG2
Files: 18
Unique ENC file IDs: 18
File Formats
bam (4)
bigWig (4)
bed (3)
bigBed (3)
fastq (2)
tsv (2)
Output types (7)
peaks (6)
alignments (2)
minus strand signal of unique reads (2)
plus strand signal of unique reads (2)
reads (2)
transcript quantifications (2)
unfiltered alignments (2)
Data Files (18)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF380JRS | ENCFF380JRS.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 131.5 MB | link | |
| ENCFF733AZU | ENCFF733AZU.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 107.8 MB | link | |
| ENCFF661YAR | ENCFF661YAR.bam | bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 | unfiltered alignments | GRCh38 | 266.6 MB | link | |
| ENCFF943BHJ | ENCFF943BHJ.bam | bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 | unfiltered alignments | GRCh38 | 299.3 MB | link | |
| ENCFF365BPP | ENCFF365BPP.bed | bed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 820.2 KB | link | |
| ENCFF463ZFZ | ENCFF463ZFZ.bed | bed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 657.7 KB | link | |
| ENCFF831PMS | ENCFF831PMS.bed | bed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 10.8 KB | link | |
| ENCFF349IPQ | ENCFF349IPQ.bigBed | bigBed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 1.2 MB | link | |
| ENCFF609EMT | ENCFF609EMT.bigBed | bigBed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 109.7 KB | link | |
| ENCFF610FCL | ENCFF610FCL.bigBed | bigBed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 1.4 MB | link | |
| ENCFF211DPF | ENCFF211DPF.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 9.0 MB | link | |
| ENCFF403BJQ | ENCFF403BJQ.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 11.3 MB | link | |
| ENCFF199ECS | ENCFF199ECS.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 9.1 MB | link | |
| ENCFF900BQT | ENCFF900BQT.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 11.5 MB | link | |
| ENCFF746UYA | ENCFF746UYA.fastq | fastq (reads) | reads | 1.1 GB | link | ||
| ENCFF975RYQ | ENCFF975RYQ.fastq | fastq (reads) | reads | 831.2 MB | link | ||
| ENCFF098WWL | ENCFF098WWL.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 19.0 MB | link | |
| ENCFF406OYY | ENCFF406OYY.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 22.6 MB | link |