ENCSR008MQM
ENCSR ENCODEeCLIP experiment on K562 against DDX43
Organism:
Homo sapiens
Experiment Types:
eCLIP
Status:
released
Contact:
Gene Yeo, UCSD
Relations
Summary
eCLIP of DDX43 in Homo sapiens K562
Overall Design
eCLIP experiment on K562 against DDX43
Analysis
View Data Processing
Analysis page is available for ENCSR008MQM.
ENCODE Metadata
Total file size: 3.8 GBAssay: eCLIP
Target: DDX43
Biosample: Homo sapiens K562
Files: 18
Unique ENC file IDs: 18
File Formats
bam (4)
bigWig (4)
bed (3)
bigBed (3)
fastq (2)
tsv (2)
Output types (7)
peaks (6)
alignments (2)
minus strand signal of unique reads (2)
plus strand signal of unique reads (2)
reads (2)
transcript quantifications (2)
unfiltered alignments (2)
Data Files (18)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF006VBB | ENCFF006VBB.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 280.9 MB | link | |
| ENCFF781FNG | ENCFF781FNG.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 282.9 MB | link | |
| ENCFF353FMJ | ENCFF353FMJ.bam | bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 | unfiltered alignments | GRCh38 | 667.9 MB | link | |
| ENCFF561HQU | ENCFF561HQU.bam | bam (unfiltered alignments); assembly: GRCh38; genome annotation: V29 | unfiltered alignments | GRCh38 | 660.0 MB | link | |
| ENCFF032BJT | ENCFF032BJT.bed | bed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 2.3 MB | link | |
| ENCFF456RNY | ENCFF456RNY.bed | bed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 2.2 MB | link | |
| ENCFF520QYX | ENCFF520QYX.bed | bed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 194.0 KB | link | |
| ENCFF199AAM | ENCFF199AAM.bigBed | bigBed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 4.1 MB | link | |
| ENCFF879CAU | ENCFF879CAU.bigBed | bigBed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 573.0 KB | link | |
| ENCFF894LGZ | ENCFF894LGZ.bigBed | bigBed (peaks); assembly: GRCh38; genome annotation: V29 | peaks | GRCh38 | 4.0 MB | link | |
| ENCFF768HEE | ENCFF768HEE.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 23.5 MB | link | |
| ENCFF848XEG | ENCFF848XEG.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 27.2 MB | link | |
| ENCFF245LIH | ENCFF245LIH.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 24.1 MB | link | |
| ENCFF251YSP | ENCFF251YSP.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 27.8 MB | link | |
| ENCFF338ZLQ | ENCFF338ZLQ.fastq | fastq (reads) | reads | 972.0 MB | link | ||
| ENCFF884KLU | ENCFF884KLU.fastq | fastq (reads) | reads | 906.5 MB | link | ||
| ENCFF199MLA | ENCFF199MLA.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 21.9 MB | link | |
| ENCFF845JPA | ENCFF845JPA.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 18.6 MB | link |