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ENCSR251LKQ

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against CSNK1E. (CSNK1E-BGKcLV28)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of CSNK1E in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens CSNK1E

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against CSNK1E. (CSNK1E-BGKcLV28)

Analysis

View Data Processing
Analysis page is available for ENCSR251LKQ.

ENCODE Metadata

Total file size: 35.0 GB
Assay: CRISPR RNA-seq
Target: CSNK1E
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens CSNK1E
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF534SHR ENCFF534SHR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.1 GB link
ENCFF711WPI ENCFF711WPI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF088XKL ENCFF088XKL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.8 GB link
ENCFF514ZKH ENCFF514ZKH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.9 GB link
ENCFF561HPJ ENCFF561HPJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 139.4 MB link
ENCFF702FXR ENCFF702FXR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 113.7 MB link
ENCFF521BSJ ENCFF521BSJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 125.0 MB link
ENCFF788EOE ENCFF788EOE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 102.2 MB link
ENCFF539EFC ENCFF539EFC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 116.1 MB link
ENCFF961YXK ENCFF961YXK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 142.5 MB link
ENCFF578TVD ENCFF578TVD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 128.9 MB link
ENCFF912JGW ENCFF912JGW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 105.1 MB link
ENCFF384GPZ ENCFF384GPZ.fastq fastq (reads) reads 2.5 GB link
ENCFF551KBO ENCFF551KBO.fastq fastq (reads) reads 2.0 GB link
ENCFF705CAH ENCFF705CAH.fastq fastq (reads) reads 2.1 GB link
ENCFF850FNR ENCFF850FNR.fastq fastq (reads) reads 2.6 GB link
ENCFF314FSJ ENCFF314FSJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF680XXM ENCFF680XXM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF147SMW ENCFF147SMW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF264AQN ENCFF264AQN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF645KIJ ENCFF645KIJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF936QOW ENCFF936QOW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link