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ENCSR892ZGW

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against AGFG1. (AGFG1-BGHcLV25)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of AGFG1 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens AGFG1

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against AGFG1. (AGFG1-BGHcLV25)

Analysis

View Data Processing
Analysis page is available for ENCSR892ZGW.

ENCODE Metadata

Total file size: 41.6 GB
Assay: CRISPR RNA-seq
Target: AGFG1
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens AGFG1
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF697JLF ENCFF697JLF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.0 GB link
ENCFF844HJR ENCFF844HJR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF005DHD ENCFF005DHD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.1 GB link
ENCFF022JCA ENCFF022JCA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 10.2 GB link
ENCFF240NIM ENCFF240NIM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 126.9 MB link
ENCFF374OXL ENCFF374OXL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 126.3 MB link
ENCFF277JCI ENCFF277JCI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 113.9 MB link
ENCFF820EBH ENCFF820EBH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 112.4 MB link
ENCFF003APO ENCFF003APO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 127.7 MB link
ENCFF401TPO ENCFF401TPO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 128.6 MB link
ENCFF248PFH ENCFF248PFH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 116.5 MB link
ENCFF927EPJ ENCFF927EPJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 114.7 MB link
ENCFF022VGK ENCFF022VGK.fastq fastq (reads) reads 2.6 GB link
ENCFF109VOJ ENCFF109VOJ.fastq fastq (reads) reads 2.6 GB link
ENCFF225EPD ENCFF225EPD.fastq fastq (reads) reads 2.6 GB link
ENCFF267YET ENCFF267YET.fastq fastq (reads) reads 2.7 GB link
ENCFF025MIU ENCFF025MIU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF038PAG ENCFF038PAG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF056YYD ENCFF056YYD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF528TIW ENCFF528TIW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF776CRL ENCFF776CRL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF881QBE ENCFF881QBE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link