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ENCSR665CVU

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against NCL. (NCL-BGKcLV19)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of NCL in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens NCL

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against NCL. (NCL-BGKcLV19)

Analysis

View Data Processing
Analysis page is available for ENCSR665CVU.

ENCODE Metadata

Total file size: 34.9 GB
Assay: CRISPR RNA-seq
Target: NCL
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens NCL
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF507GGI ENCFF507GGI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.2 GB link
ENCFF983HYL ENCFF983HYL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.3 GB link
ENCFF317DZN ENCFF317DZN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.9 GB link
ENCFF347IPA ENCFF347IPA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.1 GB link
ENCFF042PPY ENCFF042PPY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 120.3 MB link
ENCFF413AZT ENCFF413AZT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 117.1 MB link
ENCFF807IRN ENCFF807IRN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 103.3 MB link
ENCFF876TJP ENCFF876TJP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 106.1 MB link
ENCFF262CCM ENCFF262CCM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 121.7 MB link
ENCFF663PYZ ENCFF663PYZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 118.5 MB link
ENCFF086YPA ENCFF086YPA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 108.6 MB link
ENCFF353KCW ENCFF353KCW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 105.7 MB link
ENCFF361LRD ENCFF361LRD.fastq fastq (reads) reads 2.3 GB link
ENCFF381MBJ ENCFF381MBJ.fastq fastq (reads) reads 2.4 GB link
ENCFF786KPC ENCFF786KPC.fastq fastq (reads) reads 2.3 GB link
ENCFF917JQX ENCFF917JQX.fastq fastq (reads) reads 2.3 GB link
ENCFF757UFZ ENCFF757UFZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF904SNR ENCFF904SNR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF160ROB ENCFF160ROB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF322BBD ENCFF322BBD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF327IRK ENCFF327IRK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF871BWT ENCFF871BWT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link