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ENCSR153WFE

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against RUVBL2. (RUVBL2-BGHcLV31)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RUVBL2 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens RUVBL2

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against RUVBL2. (RUVBL2-BGHcLV31)

Analysis

View Data Processing
Analysis page is available for ENCSR153WFE.

ENCODE Metadata

Total file size: 29.6 GB
Assay: CRISPR RNA-seq
Target: RUVBL2
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens RUVBL2
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF527BIA ENCFF527BIA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.6 GB link
ENCFF732HFJ ENCFF732HFJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.5 GB link
ENCFF029ZAR ENCFF029ZAR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 5.2 GB link
ENCFF240DRM ENCFF240DRM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.9 GB link
ENCFF131SCW ENCFF131SCW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 114.6 MB link
ENCFF323EUV ENCFF323EUV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 84.0 MB link
ENCFF493YQW ENCFF493YQW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 102.8 MB link
ENCFF736UVJ ENCFF736UVJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 75.6 MB link
ENCFF568RDD ENCFF568RDD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 85.4 MB link
ENCFF835JWE ENCFF835JWE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 116.4 MB link
ENCFF068YEY ENCFF068YEY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 105.4 MB link
ENCFF207QKZ ENCFF207QKZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 77.5 MB link
ENCFF324XEQ ENCFF324XEQ.fastq fastq (reads) reads 2.3 GB link
ENCFF375JFU ENCFF375JFU.fastq fastq (reads) reads 2.4 GB link
ENCFF483MTR ENCFF483MTR.fastq fastq (reads) reads 1.4 GB link
ENCFF555AIK ENCFF555AIK.fastq fastq (reads) reads 1.4 GB link
ENCFF014JYF ENCFF014JYF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF790BRI ENCFF790BRI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF064CFG ENCFF064CFG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF117MMO ENCFF117MMO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF473XGO ENCFF473XGO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF613IVY ENCFF613IVY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link