← All datasets

ENCSR865UKM

ENCSR ENCODE
Export SRA CSV View on ENCODE

RNA-seq on K562 cells treated with a CRISPR gRNA against RPS3. (RPS3-BGKcLV04-C)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of RPS3 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RPS3

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against RPS3. (RPS3-BGKcLV04-C)

Analysis

View Data Processing
Analysis page is available for ENCSR865UKM.

ENCODE Metadata

Total file size: 143.9 GB
Assay: CRISPR RNA-seq
Target: RPS3
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens RPS3
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF091JVM ENCFF091JVM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 19.8 GB link
ENCFF920ONL ENCFF920ONL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 23.9 GB link
ENCFF952ILR ENCFF952ILR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 26.4 GB link
ENCFF969PXG ENCFF969PXG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 32.8 GB link
ENCFF644EKY ENCFF644EKY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 229.6 MB link
ENCFF882MUT ENCFF882MUT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 207.9 MB link
ENCFF271OJB ENCFF271OJB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 183.4 MB link
ENCFF365EZC ENCFF365EZC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 204.7 MB link
ENCFF729EGZ ENCFF729EGZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 232.8 MB link
ENCFF816HCJ ENCFF816HCJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 210.5 MB link
ENCFF322WIS ENCFF322WIS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 209.2 MB link
ENCFF745BGS ENCFF745BGS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 187.4 MB link
ENCFF029XAW ENCFF029XAW.fastq fastq (reads) reads 10.9 GB link
ENCFF429DRI ENCFF429DRI.fastq fastq (reads) reads 10.8 GB link
ENCFF684REY ENCFF684REY.fastq fastq (reads) reads 8.9 GB link
ENCFF786GAH ENCFF786GAH.fastq fastq (reads) reads 8.8 GB link
ENCFF576MWU ENCFF576MWU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF682KFX ENCFF682KFX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF142GGP ENCFF142GGP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.0 MB link
ENCFF512TUK ENCFF512TUK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.6 MB link
ENCFF911JAA ENCFF911JAA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 30.1 MB link
ENCFF985ZXD ENCFF985ZXD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.7 MB link