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ENCSR660WRQ

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against ZFP106. (ZFP106-BGKcLV08)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of ZNF106 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens ZNF106

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against ZFP106. (ZFP106-BGKcLV08)

Analysis

View Data Processing
Analysis page is available for ENCSR660WRQ.

ENCODE Metadata

Total file size: 34.1 GB
Assay: CRISPR RNA-seq
Target: ZNF106
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens ZNF106
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF095PMX ENCFF095PMX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.5 GB link
ENCFF958AKI ENCFF958AKI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.9 GB link
ENCFF459KIE ENCFF459KIE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.5 GB link
ENCFF783ZUR ENCFF783ZUR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 9.3 GB link
ENCFF092EVH ENCFF092EVH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 137.1 MB link
ENCFF455IOF ENCFF455IOF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 110.3 MB link
ENCFF573WDN ENCFF573WDN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 97.6 MB link
ENCFF987FVN ENCFF987FVN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 121.0 MB link
ENCFF227VNH ENCFF227VNH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 112.2 MB link
ENCFF813AIO ENCFF813AIO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 139.3 MB link
ENCFF182DAW ENCFF182DAW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 100.4 MB link
ENCFF595KII ENCFF595KII.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 124.3 MB link
ENCFF088FOU ENCFF088FOU.fastq fastq (reads) reads 1.8 GB link
ENCFF101GPO ENCFF101GPO.fastq fastq (reads) reads 1.8 GB link
ENCFF226HVF ENCFF226HVF.fastq fastq (reads) reads 2.6 GB link
ENCFF494HST ENCFF494HST.fastq fastq (reads) reads 2.5 GB link
ENCFF504ZCE ENCFF504ZCE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF941XWM ENCFF941XWM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF043GTJ ENCFF043GTJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF089XQM ENCFF089XQM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF672LGL ENCFF672LGL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF950DMY ENCFF950DMY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link