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ENCSR655JYC

ENCSR ENCODE
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Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-D)

Organism: Homo sapiens
Experiment Types:
shRNA RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

shRNA RNA-seq of in Homo sapiens K562 expressing RNAi

Overall Design

Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-D)

Analysis

View Data Processing
Analysis page is available for ENCSR655JYC.

ENCODE Metadata

Total file size: 21.4 GB
Assay: shRNA RNA-seq
Biosample: Homo sapiens K562 expressing RNAi
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF558KIA ENCFF558KIA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.2 GB link
ENCFF961DCD ENCFF961DCD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.0 GB link
ENCFF345NJJ ENCFF345NJJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.3 GB link
ENCFF575VDI ENCFF575VDI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.7 GB link
ENCFF189HHF ENCFF189HHF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 71.1 MB link
ENCFF666ZTU ENCFF666ZTU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 70.0 MB link
ENCFF390BZF ENCFF390BZF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 62.3 MB link
ENCFF584QHD ENCFF584QHD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 61.8 MB link
ENCFF334XBP ENCFF334XBP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 72.0 MB link
ENCFF635NDT ENCFF635NDT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 70.9 MB link
ENCFF374YPP ENCFF374YPP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 63.8 MB link
ENCFF690OVO ENCFF690OVO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 63.3 MB link
ENCFF071SDF ENCFF071SDF.fastq fastq (reads) reads 1.6 GB link
ENCFF477PRG ENCFF477PRG.fastq fastq (reads) reads 1.4 GB link
ENCFF558PGN ENCFF558PGN.fastq fastq (reads) reads 1.3 GB link
ENCFF784MWI ENCFF784MWI.fastq fastq (reads) reads 1.4 GB link
ENCFF179QLC ENCFF179QLC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF194QGI ENCFF194QGI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF231AOQ ENCFF231AOQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF601QLC ENCFF601QLC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF856CLV ENCFF856CLV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF985BWJ ENCFF985BWJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link