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ENCSR429OUR

ENCSR ENCODE
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RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX20. (DDX20-BGHcLV10)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of DDX20 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DDX20

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX20. (DDX20-BGHcLV10)

Analysis

View Data Processing
Analysis page is available for ENCSR429OUR.

ENCODE Metadata

Total file size: 34.7 GB
Assay: CRISPR RNA-seq
Target: DDX20
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DDX20
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF239HYI ENCFF239HYI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.9 GB link
ENCFF409AXL ENCFF409AXL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.3 GB link
ENCFF258ZYY ENCFF258ZYY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.9 GB link
ENCFF974QFW ENCFF974QFW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 8.1 GB link
ENCFF269ZEJ ENCFF269ZEJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 114.8 MB link
ENCFF479NRH ENCFF479NRH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 110.4 MB link
ENCFF529VXD ENCFF529VXD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 98.9 MB link
ENCFF628PDG ENCFF628PDG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 102.7 MB link
ENCFF425JVU ENCFF425JVU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 112.5 MB link
ENCFF989DGD ENCFF989DGD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 117.1 MB link
ENCFF426QVM ENCFF426QVM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 101.7 MB link
ENCFF521WSA ENCFF521WSA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 105.6 MB link
ENCFF187SFR ENCFF187SFR.fastq fastq (reads) reads 2.2 GB link
ENCFF298RFX ENCFF298RFX.fastq fastq (reads) reads 2.0 GB link
ENCFF380IHJ ENCFF380IHJ.fastq fastq (reads) reads 2.0 GB link
ENCFF619SXC ENCFF619SXC.fastq fastq (reads) reads 2.2 GB link
ENCFF697ANN ENCFF697ANN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF741NTJ ENCFF741NTJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF335BZC ENCFF335BZC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF392MVC ENCFF392MVC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF420RBM ENCFF420RBM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF610BXB ENCFF610BXB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link