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ENCSR898ABR

ENCSR ENCODE
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Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV36-D)

Organism: Homo sapiens
Experiment Types:
shRNA RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

shRNA RNA-seq of in Homo sapiens K562 expressing RNAi

Overall Design

Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV36-D)

Analysis

View Data Processing
Analysis page is available for ENCSR898ABR.

ENCODE Metadata

Total file size: 16.2 GB
Assay: shRNA RNA-seq
Biosample: Homo sapiens K562 expressing RNAi
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF619SSA ENCFF619SSA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 1.8 GB link
ENCFF652GAC ENCFF652GAC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.8 GB link
ENCFF186DAM ENCFF186DAM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 2.6 GB link
ENCFF347YPN ENCFF347YPN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.0 GB link
ENCFF686NYL ENCFF686NYL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 47.0 MB link
ENCFF744BJQ ENCFF744BJQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 68.9 MB link
ENCFF239ZOT ENCFF239ZOT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 61.1 MB link
ENCFF583YZJ ENCFF583YZJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 41.9 MB link
ENCFF207BZW ENCFF207BZW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 69.7 MB link
ENCFF600XFG ENCFF600XFG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 47.6 MB link
ENCFF077ITH ENCFF077ITH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 42.8 MB link
ENCFF835LYH ENCFF835LYH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 62.4 MB link
ENCFF092VHP ENCFF092VHP.fastq fastq (reads) reads 809.7 MB link
ENCFF692VVD ENCFF692VVD.fastq fastq (reads) reads 913.1 MB link
ENCFF794EFW ENCFF794EFW.fastq fastq (reads) reads 1.2 GB link
ENCFF951UDW ENCFF951UDW.fastq fastq (reads) reads 1.4 GB link
ENCFF675GRV ENCFF675GRV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF981OYZ ENCFF981OYZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF071NNQ ENCFF071NNQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF243DCK ENCFF243DCK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF522RPP ENCFF522RPP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF543OPZ ENCFF543OPZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.1 MB link