← All datasets

ENCSR400SCX

ENCSR ENCODE
Export SRA CSV View on ENCODE

RNA-seq on HepG2 cells treated with a CRISPR gRNA against GLRX3. (GLRX3-BGHcLV12)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of GLRX3 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens GLRX3

Overall Design

RNA-seq on HepG2 cells treated with a CRISPR gRNA against GLRX3. (GLRX3-BGHcLV12)

Analysis

View Data Processing
Analysis page is available for ENCSR400SCX.

ENCODE Metadata

Total file size: 47.5 GB
Assay: CRISPR RNA-seq
Target: GLRX3
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens GLRX3
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF009MCL ENCFF009MCL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.8 GB link
ENCFF287MJB ENCFF287MJB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 5.5 GB link
ENCFF139ZXA ENCFF139ZXA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 12.2 GB link
ENCFF371WKY ENCFF371WKY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 11.1 GB link
ENCFF932VCP ENCFF932VCP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 121.0 MB link
ENCFF947CLF ENCFF947CLF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 122.5 MB link
ENCFF496DQJ ENCFF496DQJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 108.9 MB link
ENCFF872JAH ENCFF872JAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 110.3 MB link
ENCFF204ATR ENCFF204ATR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 124.5 MB link
ENCFF881COI ENCFF881COI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 122.9 MB link
ENCFF462WXN ENCFF462WXN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 111.6 MB link
ENCFF507KLA ENCFF507KLA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 113.0 MB link
ENCFF029TOX ENCFF029TOX.fastq fastq (reads) reads 2.8 GB link
ENCFF101NQW ENCFF101NQW.fastq fastq (reads) reads 3.0 GB link
ENCFF169ZNY ENCFF169ZNY.fastq fastq (reads) reads 3.1 GB link
ENCFF545VHH ENCFF545VHH.fastq fastq (reads) reads 2.9 GB link
ENCFF614WJV ENCFF614WJV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF931ZKQ ENCFF931ZKQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.5 MB link
ENCFF193PZL ENCFF193PZL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.5 MB link
ENCFF276WWG ENCFF276WWG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.2 MB link
ENCFF412JAZ ENCFF412JAZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF549GLW ENCFF549GLW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link