← All datasets

ENCSR712CQC

ENCSR ENCODE
Export SRA CSV View on ENCODE

RNA-seq on K562 cells treated with a CRISPR gRNA against NT. (NT-BGKcLV13)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens K562 genetically modified (deletion) using CRISPR

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against NT. (NT-BGKcLV13)

Analysis

View Data Processing
Analysis page is available for ENCSR712CQC.

ENCODE Metadata

Total file size: 25.2 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF361SXU ENCFF361SXU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.9 GB link
ENCFF810KHG ENCFF810KHG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 3.4 GB link
ENCFF340OBI ENCFF340OBI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 5.5 GB link
ENCFF756VSV ENCFF756VSV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 6.2 GB link
ENCFF222YVG ENCFF222YVG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 101.7 MB link
ENCFF650PPJ ENCFF650PPJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 109.2 MB link
ENCFF222JIM ENCFF222JIM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 96.7 MB link
ENCFF610KFW ENCFF610KFW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 89.2 MB link
ENCFF103SLJ ENCFF103SLJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 110.4 MB link
ENCFF496JVG ENCFF496JVG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 102.8 MB link
ENCFF007TSC ENCFF007TSC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 98.8 MB link
ENCFF632WRT ENCFF632WRT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 91.2 MB link
ENCFF048VAD ENCFF048VAD.fastq fastq (reads) reads 1.4 GB link
ENCFF509GGA ENCFF509GGA.fastq fastq (reads) reads 1.7 GB link
ENCFF584EBM ENCFF584EBM.fastq fastq (reads) reads 1.5 GB link
ENCFF778OLX ENCFF778OLX.fastq fastq (reads) reads 1.6 GB link
ENCFF116ZHL ENCFF116ZHL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF160UOH ENCFF160UOH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF020LPT ENCFF020LPT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF228TPL ENCFF228TPL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.3 MB link
ENCFF450EWZ ENCFF450EWZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF684FLX ENCFF684FLX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link