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ENCSR093ERJ

ENCSR ENCODE
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Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV37-D)

Organism: Homo sapiens
Experiment Types:
shRNA RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

shRNA RNA-seq of in Homo sapiens HepG2 expressing RNAi

Overall Design

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV37-D)

Analysis

View Data Processing
Analysis page is available for ENCSR093ERJ.

ENCODE Metadata

Total file size: 14.9 GB
Assay: shRNA RNA-seq
Biosample: Homo sapiens HepG2 expressing RNAi
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF008VSN ENCFF008VSN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.1 GB link
ENCFF951ZGS ENCFF951ZGS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.1 GB link
ENCFF072FMP ENCFF072FMP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 3.1 GB link
ENCFF333FUG ENCFF333FUG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 3.1 GB link
ENCFF216WDO ENCFF216WDO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 48.4 MB link
ENCFF442RGK ENCFF442RGK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 51.8 MB link
ENCFF534QFM ENCFF534QFM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 43.4 MB link
ENCFF841ILB ENCFF841ILB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 46.1 MB link
ENCFF152BYB ENCFF152BYB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 52.9 MB link
ENCFF285AFZ ENCFF285AFZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 49.5 MB link
ENCFF489GTG ENCFF489GTG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 47.3 MB link
ENCFF902AND ENCFF902AND.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 44.6 MB link
ENCFF328LNA ENCFF328LNA.fastq fastq (reads) reads 945.1 MB link
ENCFF768ITX ENCFF768ITX.fastq fastq (reads) reads 931.1 MB link
ENCFF799XZV ENCFF799XZV.fastq fastq (reads) reads 1.0 GB link
ENCFF843XUC ENCFF843XUC.fastq fastq (reads) reads 1.0 GB link
ENCFF431CSO ENCFF431CSO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF867AGP ENCFF867AGP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF035RZE ENCFF035RZE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF302FRZ ENCFF302FRZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF347RHT ENCFF347RHT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.2 MB link
ENCFF555JJJ ENCFF555JJJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.1 MB link