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ENCSR292PXV

ENCSR ENCODE
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RNA-seq on K562 cells treated with a CRISPR gRNA against NT. (NT-BGKcLV11)

Organism: Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

CRISPR RNA-seq of in Homo sapiens K562 genetically modified (deletion) using CRISPR

Overall Design

RNA-seq on K562 cells treated with a CRISPR gRNA against NT. (NT-BGKcLV11)

Analysis

View Data Processing
Analysis page is available for ENCSR292PXV.

ENCODE Metadata

Total file size: 26.8 GB
Assay: CRISPR RNA-seq
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR
Files: 22
Unique ENC file IDs: 22
File Formats
bigWig (8) tsv (6) bam (4) fastq (4)
Output types (9)
reads (4) transcript quantifications (4) alignments (2) gene quantifications (2) minus strand signal of all reads (2) minus strand signal of unique reads (2) plus strand signal of all reads (2) plus strand signal of unique reads (2) transcriptome alignments (2)

Data Files (22)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF352FJR ENCFF352FJR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 2.7 GB link
ENCFF687WEK ENCFF687WEK.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 4.2 GB link
ENCFF418CDM ENCFF418CDM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 7.8 GB link
ENCFF972HPY ENCFF972HPY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 4.5 GB link
ENCFF238ANO ENCFF238ANO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 89.9 MB link
ENCFF899MCK ENCFF899MCK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 121.9 MB link
ENCFF427JKO ENCFF427JKO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 79.0 MB link
ENCFF880TSJ ENCFF880TSJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 107.4 MB link
ENCFF548EFA ENCFF548EFA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 91.2 MB link
ENCFF894HHM ENCFF894HHM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 123.9 MB link
ENCFF092YAK ENCFF092YAK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 110.3 MB link
ENCFF315TBH ENCFF315TBH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 81.0 MB link
ENCFF256ISO ENCFF256ISO.fastq fastq (reads) reads 1.3 GB link
ENCFF430UBM ENCFF430UBM.fastq fastq (reads) reads 1.2 GB link
ENCFF762MRA ENCFF762MRA.fastq fastq (reads) reads 2.2 GB link
ENCFF879OQJ ENCFF879OQJ.fastq fastq (reads) reads 2.1 GB link
ENCFF145YOO ENCFF145YOO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF366OWS ENCFF366OWS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF182LGP ENCFF182LGP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF268MQC ENCFF268MQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF304YMJ ENCFF304YMJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link
ENCFF668LOF ENCFF668LOF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.4 MB link