ENCSR415DJT
ENCSR ENCODERNA-seq on K562 cells treated with a CRISPR gRNA against PTBP1. (PTBP1_BGKcLV02)
Organism:
Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
CRISPR RNA-seq of PTBP1 in Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens PTBP1
Overall Design
RNA-seq on K562 cells treated with a CRISPR gRNA against PTBP1. (PTBP1_BGKcLV02)
Analysis
View Data Processing
Analysis page is available for ENCSR415DJT.
ENCODE Metadata
Total file size: 95.2 GBAssay: CRISPR RNA-seq
Target: PTBP1
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR targeting H. sapiens PTBP1
Files: 84
Unique ENC file IDs: 84
File Formats
bigWig (48)
bam (18)
tsv (14)
fastq (4)
Output types (9)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
reads (4)
Data Files (84)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF066RIB | ENCFF066RIB.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF075NBX | ENCFF075NBX.bam | bam (alignments) | alignments | 3.7 GB | link | ||
| ENCFF107DGJ | ENCFF107DGJ.bam | bam (alignments) | alignments | 4.4 GB | link | ||
| ENCFF300DUR | ENCFF300DUR.bam | bam (alignments) | alignments | 4.4 GB | link | ||
| ENCFF412NNW | ENCFF412NNW.bam | bam (alignments) | alignments | 3.6 GB | link | ||
| ENCFF503TXE | ENCFF503TXE.bam | bam (alignments) | alignments | 4.6 GB | link | ||
| ENCFF569DLQ | ENCFF569DLQ.bam | bam (alignments) | alignments | 4.6 GB | link | ||
| ENCFF673NFW | ENCFF673NFW.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF780QXW | ENCFF780QXW.bam | bam (alignments) | alignments | 4.2 GB | link | ||
| ENCFF824SXA | ENCFF824SXA.bam | bam (alignments) | alignments | 3.6 GB | link | ||
| ENCFF914MST | ENCFF914MST.bam | bam (alignments) | alignments | 4.4 GB | link | ||
| ENCFF948SLN | ENCFF948SLN.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF072EOU | ENCFF072EOU.bam | bam (transcriptome alignments) | transcriptome alignments | 5.4 GB | link | ||
| ENCFF246MPK | ENCFF246MPK.bam | bam (transcriptome alignments) | transcriptome alignments | 6.2 GB | link | ||
| ENCFF374OXE | ENCFF374OXE.bam | bam (transcriptome alignments) | transcriptome alignments | 5.4 GB | link | ||
| ENCFF627RIV | ENCFF627RIV.bam | bam (transcriptome alignments) | transcriptome alignments | 5.0 GB | link | ||
| ENCFF652XOJ | ENCFF652XOJ.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF714QTQ | ENCFF714QTQ.bam | bam (transcriptome alignments) | transcriptome alignments | 5.8 GB | link | ||
| ENCFF023MXZ | ENCFF023MXZ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 97.2 MB | link | ||
| ENCFF136DML | ENCFF136DML.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 106.4 MB | link | ||
| ENCFF326IWU | ENCFF326IWU.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 108.9 MB | link | ||
| ENCFF387AIB | ENCFF387AIB.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 94.1 MB | link | ||
| ENCFF468WKS | ENCFF468WKS.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 92.9 MB | link | ||
| ENCFF472ENF | ENCFF472ENF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 97.9 MB | link | ||
| ENCFF612KJM | ENCFF612KJM.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 89.0 MB | link | ||
| ENCFF619VWC | ENCFF619VWC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 103.3 MB | link | ||
| ENCFF626CXA | ENCFF626CXA.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 104.4 MB | link | ||
| ENCFF682BMI | ENCFF682BMI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 104.4 MB | link | ||
| ENCFF793QSV | ENCFF793QSV.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 95.8 MB | link | ||
| ENCFF877YJJ | ENCFF877YJJ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 108.9 MB | link | ||
| ENCFF073WQA | ENCFF073WQA.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 89.8 MB | link | ||
| ENCFF104URX | ENCFF104URX.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 85.9 MB | link | ||
| ENCFF211EFF | ENCFF211EFF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 87.0 MB | link | ||
| ENCFF221GQQ | ENCFF221GQQ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 94.3 MB | link | ||
| ENCFF246QMN | ENCFF246QMN.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 89.2 MB | link | ||
| ENCFF376PSD | ENCFF376PSD.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 95.0 MB | link | ||
| ENCFF565CLR | ENCFF565CLR.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 91.9 MB | link | ||
| ENCFF677JFS | ENCFF677JFS.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 95.2 MB | link | ||
| ENCFF695ADK | ENCFF695ADK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 91.5 MB | link | ||
| ENCFF722ZPX | ENCFF722ZPX.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 92.4 MB | link | ||
| ENCFF810KMW | ENCFF810KMW.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 80.9 MB | link | ||
| ENCFF900SAQ | ENCFF900SAQ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 84.9 MB | link | ||
| ENCFF078HLE | ENCFF078HLE.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 105.8 MB | link | ||
| ENCFF124JUX | ENCFF124JUX.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 98.4 MB | link | ||
| ENCFF403CIE | ENCFF403CIE.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 94.8 MB | link | ||
| ENCFF505IUM | ENCFF505IUM.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 105.8 MB | link | ||
| ENCFF513WRC | ENCFF513WRC.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 90.7 MB | link | ||
| ENCFF615TLS | ENCFF615TLS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 110.3 MB | link | ||
| ENCFF709XFU | ENCFF709XFU.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 110.3 MB | link | ||
| ENCFF712UGW | ENCFF712UGW.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 104.7 MB | link | ||
| ENCFF792NRJ | ENCFF792NRJ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 107.8 MB | link | ||
| ENCFF833JOS | ENCFF833JOS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 95.4 MB | link | ||
| ENCFF909ZYT | ENCFF909ZYT.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 99.7 MB | link | ||
| ENCFF941XFP | ENCFF941XFP.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 97.7 MB | link | ||
| ENCFF018KAW | ENCFF018KAW.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 89.4 MB | link | ||
| ENCFF097HAS | ENCFF097HAS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 83.3 MB | link | ||
| ENCFF122NHH | ENCFF122NHH.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 97.3 MB | link | ||
| ENCFF139OMD | ENCFF139OMD.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 93.8 MB | link | ||
| ENCFF514YRS | ENCFF514YRS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 87.3 MB | link | ||
| ENCFF575FFB | ENCFF575FFB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 92.2 MB | link | ||
| ENCFF626OBP | ENCFF626OBP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 96.6 MB | link | ||
| ENCFF642WUJ | ENCFF642WUJ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 88.0 MB | link | ||
| ENCFF673IGN | ENCFF673IGN.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 94.9 MB | link | ||
| ENCFF809DDB | ENCFF809DDB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 97.7 MB | link | ||
| ENCFF874WDM | ENCFF874WDM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 94.3 MB | link | ||
| ENCFF932MYT | ENCFF932MYT.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 91.2 MB | link | ||
| ENCFF163EEW | ENCFF163EEW.fastq | fastq (reads) | reads | 2.4 GB | link | ||
| ENCFF279WFP | ENCFF279WFP.fastq | fastq (reads) | reads | 2.5 GB | link | ||
| ENCFF769DHO | ENCFF769DHO.fastq | fastq (reads) | reads | 2.5 GB | link | ||
| ENCFF879JZQ | ENCFF879JZQ.fastq | fastq (reads) | reads | 2.4 GB | link | ||
| ENCFF057JQX | ENCFF057JQX.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF090DUM | ENCFF090DUM.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF139SNZ | ENCFF139SNZ.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF401XBH | ENCFF401XBH.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF503UGT | ENCFF503UGT.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF589WON | ENCFF589WON.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF040XMN | ENCFF040XMN.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF214GHE | ENCFF214GHE.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF351WKU | ENCFF351WKU.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF407XRX | ENCFF407XRX.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF521QLD | ENCFF521QLD.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF590ANC | ENCFF590ANC.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF689BYR | ENCFF689BYR.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF790OZE | ENCFF790OZE.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link |