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ENCSR316JQA

ENCSR ENCODE
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DROSHA ChIP-seq on HepG2

Organism: Homo sapiens
Experiment Types:
TF ChIP-seq
Status: revoked
Contact: Xiang-Dong Fu, UCSD

Summary

TF ChIP-seq of DROSHA in Homo sapiens HepG2

Overall Design

DROSHA ChIP-seq on HepG2

Analysis

View Data Processing
Analysis page is available for ENCSR316JQA.

ENCODE Metadata

Total file size: 7.5 GB
Assay: TF ChIP-seq
Target: DROSHA
Biosample: Homo sapiens HepG2
Files: 30
Unique ENC file IDs: 30
File Formats
bam (8) bed (7) bigBed (7) bigWig (6) fastq (2)
Output types (8)
peaks and background as input for IDR (6) alignments (4) conservative IDR thresholded peaks (4) optimal IDR thresholded peaks (4) unfiltered alignments (4) fold change over control (3) signal p-value (3) reads (2)

Data Files (30)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF218JWT ENCFF218JWT.bam bam (alignments); assembly: GRCh38 alignments GRCh38 331.1 MB link
ENCFF300NGV ENCFF300NGV.bam bam (alignments); assembly: GRCh38 alignments GRCh38 132.8 MB link
ENCFF535QAA ENCFF535QAA.bam bam (alignments); assembly: hg19 alignments hg19 133.0 MB link
ENCFF807GZW ENCFF807GZW.bam bam (alignments); assembly: hg19 alignments hg19 331.6 MB link
ENCFF792WTA ENCFF792WTA.bam bam (unfiltered alignments); assembly: GRCh38 unfiltered alignments GRCh38 679.1 MB link
ENCFF850HNG ENCFF850HNG.bam bam (unfiltered alignments); assembly: GRCh38 unfiltered alignments GRCh38 957.5 MB link
ENCFF039OCC ENCFF039OCC.bam bam (unfiltered alignments); assembly: hg19 unfiltered alignments hg19 954.0 MB link
ENCFF085MOB ENCFF085MOB.bam bam (unfiltered alignments); assembly: hg19 unfiltered alignments hg19 677.4 MB link
ENCFF237PTI ENCFF237PTI.bed bed (conservative IDR thresholded peaks); assembly: hg19 conservative IDR thresholded peaks hg19 5.7 KB link
ENCFF978JKR ENCFF978JKR.bed bed (conservative IDR thresholded peaks); assembly: hg19 conservative IDR thresholded peaks hg19 13.9 KB link
ENCFF385MVX ENCFF385MVX.bed bed (optimal IDR thresholded peaks); assembly: hg19 optimal IDR thresholded peaks hg19 32.2 KB link
ENCFF437RBO ENCFF437RBO.bed bed (optimal IDR thresholded peaks); assembly: hg19 optimal IDR thresholded peaks hg19 16.5 KB link
ENCFF209KQK ENCFF209KQK.bed bed (peaks and background as input for IDR); assembly: hg19 peaks and background as input for IDR hg19 5.2 MB link
ENCFF402GFM ENCFF402GFM.bed bed (peaks and background as input for IDR); assembly: hg19 peaks and background as input for IDR hg19 4.3 MB link
ENCFF627MAW ENCFF627MAW.bed bed (peaks and background as input for IDR); assembly: hg19 peaks and background as input for IDR hg19 1.1 MB link
ENCFF154WGQ ENCFF154WGQ.bigBed bigBed (conservative IDR thresholded peaks); assembly: hg19 conservative IDR thresholded peaks hg19 51.1 KB link
ENCFF738DMY ENCFF738DMY.bigBed bigBed (conservative IDR thresholded peaks); assembly: hg19 conservative IDR thresholded peaks hg19 63.5 KB link
ENCFF278IHS ENCFF278IHS.bigBed bigBed (optimal IDR thresholded peaks); assembly: hg19 optimal IDR thresholded peaks hg19 67.0 KB link
ENCFF298ELL ENCFF298ELL.bigBed bigBed (optimal IDR thresholded peaks); assembly: hg19 optimal IDR thresholded peaks hg19 105.0 KB link
ENCFF686UWM ENCFF686UWM.bigBed bigBed (peaks and background as input for IDR); assembly: hg19 peaks and background as input for IDR hg19 10.0 MB link
ENCFF717YUX ENCFF717YUX.bigBed bigBed (peaks and background as input for IDR); assembly: hg19 peaks and background as input for IDR hg19 2.4 MB link
ENCFF870USZ ENCFF870USZ.bigBed bigBed (peaks and background as input for IDR); assembly: hg19 peaks and background as input for IDR hg19 10.6 MB link
ENCFF066GED ENCFF066GED.bigWig bigWig (fold change over control); assembly: hg19 fold change over control hg19 94.6 MB link
ENCFF213ZDJ ENCFF213ZDJ.bigWig bigWig (fold change over control); assembly: hg19 fold change over control hg19 396.8 MB link
ENCFF514HIB ENCFF514HIB.bigWig bigWig (fold change over control); assembly: hg19 fold change over control hg19 206.0 MB link
ENCFF137IUK ENCFF137IUK.bigWig bigWig (signal p-value); assembly: hg19 signal p-value hg19 367.9 MB link
ENCFF366ZDM ENCFF366ZDM.bigWig bigWig (signal p-value); assembly: hg19 signal p-value hg19 318.6 MB link
ENCFF540SUH ENCFF540SUH.bigWig bigWig (signal p-value); assembly: hg19 signal p-value hg19 650.8 MB link
ENCFF360OUT ENCFF360OUT.fastq fastq (reads) reads 604.0 MB link
ENCFF792SUU ENCFF792SUU.fastq fastq (reads) reads 771.9 MB link