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ENCSR000AEF

ENCSR ENCODE
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RNA Evaluation Gm12878 Long Poly-A+ from Graveley

Organism: Homo sapiens
Experiment Types:
polyA plus RNA-seq
Status: released
Contact: Brenton Graveley, UConn

Summary

polyA plus RNA-seq of in Homo sapiens GM12878

Overall Design

RNA Evaluation Gm12878 Long Poly-A+ from Graveley

Analysis

View Data Processing
Analysis page is available for ENCSR000AEF.

ENCODE Metadata

Total file size: 408.5 GB
Assay: polyA plus RNA-seq
Biosample: Homo sapiens GM12878
Files: 100
Unique ENC file IDs: 100
File Formats
bigWig (60) bam (22) tsv (14) fastq (4)
Output types (13)
alignments (16) minus strand signal of unique reads (14) plus strand signal of unique reads (14) minus strand signal of all reads (12) plus strand signal of all reads (12) transcript quantifications (8) gene quantifications (6) transcriptome alignments (6) reads (4) minus strand signal (2) plus strand signal (2) signal (2) signal of unique reads (2)

Data Files (100)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF547YFO ENCFF547YFO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 alignments GRCh38 9.6 GB link
ENCFF782IVX ENCFF782IVX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 alignments GRCh38 24.3 GB link
ENCFF544CGO ENCFF544CGO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 24.3 GB link
ENCFF949BCP ENCFF949BCP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 alignments GRCh38 9.6 GB link
ENCFF001RSE ENCFF001RSE.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 8.0 GB link
ENCFF001RSH ENCFF001RSH.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 20.0 GB link
ENCFF001RWH ENCFF001RWH.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 8.1 GB link
ENCFF001RWI ENCFF001RWI.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 20.4 GB link
ENCFF001RZJ ENCFF001RZJ.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 20.0 GB link
ENCFF001SAU ENCFF001SAU.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 8.0 GB link
ENCFF001SDA ENCFF001SDA.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 8.1 GB link
ENCFF001SDJ ENCFF001SDJ.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 20.3 GB link
ENCFF490VIX ENCFF490VIX.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 24.2 GB link
ENCFF779OTU ENCFF779OTU.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 8.1 GB link
ENCFF786EVL ENCFF786EVL.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 20.3 GB link
ENCFF978VYH ENCFF978VYH.bam bam (alignments); assembly: hg19; genome annotation: V19 alignments hg19 9.6 GB link
ENCFF161WMO ENCFF161WMO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 transcriptome alignments GRCh38 10.9 GB link
ENCFF250ZPU ENCFF250ZPU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 transcriptome alignments GRCh38 28.3 GB link
ENCFF471KGS ENCFF471KGS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 31.7 GB link
ENCFF541DQF ENCFF541DQF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 transcriptome alignments GRCh38 12.2 GB link
ENCFF242CSI ENCFF242CSI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 transcriptome alignments hg19 28.1 GB link
ENCFF778SFW ENCFF778SFW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 transcriptome alignments hg19 10.8 GB link
ENCFF001SCW ENCFF001SCW.bigWig bigWig (minus strand signal); assembly: hg19; genome annotation: V19 minus strand signal hg19 46.5 MB link
ENCFF001SDC ENCFF001SDC.bigWig bigWig (minus strand signal); assembly: hg19; genome annotation: V19 minus strand signal hg19 117.6 MB link
ENCFF065VJQ ENCFF065VJQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 minus strand signal of all reads GRCh38 66.2 MB link
ENCFF541DAO ENCFF541DAO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 minus strand signal of all reads GRCh38 158.1 MB link
ENCFF078ATR ENCFF078ATR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 66.2 MB link
ENCFF892WMR ENCFF892WMR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 minus strand signal of all reads GRCh38 158.1 MB link
ENCFF001RXF ENCFF001RXF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 52.4 MB link
ENCFF001RXG ENCFF001RXG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 131.2 MB link
ENCFF001SJW ENCFF001SJW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 151.7 MB link
ENCFF001SLC ENCFF001SLC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 61.0 MB link
ENCFF310NFR ENCFF310NFR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 156.8 MB link
ENCFF370FLV ENCFF370FLV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 141.8 MB link
ENCFF401VDR ENCFF401VDR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 65.9 MB link
ENCFF703STR ENCFF703STR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 minus strand signal of all reads hg19 58.0 MB link
ENCFF546HRU ENCFF546HRU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 minus strand signal of unique reads GRCh38 60.9 MB link
ENCFF619NYQ ENCFF619NYQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 minus strand signal of unique reads GRCh38 145.2 MB link
ENCFF763UJG ENCFF763UJG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 145.1 MB link
ENCFF786IQR ENCFF786IQR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 minus strand signal of unique reads GRCh38 60.9 MB link
ENCFF001RWP ENCFF001RWP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 49.1 MB link
ENCFF001RWQ ENCFF001RWQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 122.7 MB link
ENCFF001SCV ENCFF001SCV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 44.4 MB link
ENCFF001SDB ENCFF001SDB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 112.2 MB link
ENCFF001SJT ENCFF001SJT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 141.2 MB link
ENCFF001SKZ ENCFF001SKZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 57.0 MB link
ENCFF028FEL ENCFF028FEL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 60.8 MB link
ENCFF642HYX ENCFF642HYX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 53.7 MB link
ENCFF684AML ENCFF684AML.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 144.9 MB link
ENCFF950STM ENCFF950STM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 minus strand signal of unique reads hg19 132.3 MB link
ENCFF001SCY ENCFF001SCY.bigWig bigWig (plus strand signal); assembly: hg19; genome annotation: V19 plus strand signal hg19 47.5 MB link
ENCFF001SDD ENCFF001SDD.bigWig bigWig (plus strand signal); assembly: hg19; genome annotation: V19 plus strand signal hg19 120.7 MB link
ENCFF180NZL ENCFF180NZL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 plus strand signal of all reads GRCh38 162.1 MB link
ENCFF350INW ENCFF350INW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 plus strand signal of all reads GRCh38 67.8 MB link
ENCFF037DUE ENCFF037DUE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 67.8 MB link
ENCFF985TNZ ENCFF985TNZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 plus strand signal of all reads GRCh38 162.1 MB link
ENCFF001RXN ENCFF001RXN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 53.5 MB link
ENCFF001RXO ENCFF001RXO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 134.5 MB link
ENCFF001SJU ENCFF001SJU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 155.6 MB link
ENCFF001SLA ENCFF001SLA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 62.4 MB link
ENCFF291LYI ENCFF291LYI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 160.7 MB link
ENCFF297NJL ENCFF297NJL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 67.3 MB link
ENCFF692REJ ENCFF692REJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 59.5 MB link
ENCFF823VTO ENCFF823VTO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 plus strand signal of all reads hg19 145.7 MB link
ENCFF321FYO ENCFF321FYO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 plus strand signal of unique reads GRCh38 62.9 MB link
ENCFF825YTH ENCFF825YTH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 plus strand signal of unique reads GRCh38 150.4 MB link
ENCFF243ECE ENCFF243ECE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 150.3 MB link
ENCFF678ITA ENCFF678ITA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 plus strand signal of unique reads GRCh38 62.9 MB link
ENCFF001RWX ENCFF001RWX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 50.7 MB link
ENCFF001RWY ENCFF001RWY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 127.2 MB link
ENCFF001SCX ENCFF001SCX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 45.9 MB link
ENCFF001SDE ENCFF001SDE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 116.2 MB link
ENCFF001SJV ENCFF001SJV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 146.5 MB link
ENCFF001SLB ENCFF001SLB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 59.1 MB link
ENCFF174TFM ENCFF174TFM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 62.8 MB link
ENCFF565IHR ENCFF565IHR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 55.6 MB link
ENCFF580FDR ENCFF580FDR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 137.3 MB link
ENCFF793HMS ENCFF793HMS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 plus strand signal of unique reads hg19 150.2 MB link
ENCFF001RRZ ENCFF001RRZ.bigWig bigWig (signal); assembly: hg19; genome annotation: V19 signal hg19 253.6 MB link
ENCFF001RSA ENCFF001RSA.bigWig bigWig (signal); assembly: hg19; genome annotation: V19 signal hg19 99.5 MB link
ENCFF001RRW ENCFF001RRW.bigWig bigWig (signal of unique reads); assembly: hg19; genome annotation: V19 signal of unique reads hg19 239.2 MB link
ENCFF001RSB ENCFF001RSB.bigWig bigWig (signal of unique reads); assembly: hg19; genome annotation: V19 signal of unique reads hg19 93.7 MB link
ENCFF001RCX ENCFF001RCX.fastq fastq (reads) reads 13.3 GB link
ENCFF001RCY ENCFF001RCY.fastq fastq (reads) reads 5.3 GB link
ENCFF001RDF ENCFF001RDF.fastq fastq (reads) reads 13.2 GB link
ENCFF001RDG ENCFF001RDG.fastq fastq (reads) reads 5.5 GB link
ENCFF456WWG ENCFF456WWG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 gene quantifications GRCh38 9.5 MB link
ENCFF644DIQ ENCFF644DIQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 gene quantifications GRCh38 9.4 MB link
ENCFF431UBR ENCFF431UBR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.4 MB link
ENCFF866QJL ENCFF866QJL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 gene quantifications GRCh38 10.3 MB link
ENCFF023VHU ENCFF023VHU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 gene quantifications hg19 9.1 MB link
ENCFF392VPX ENCFF392VPX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 gene quantifications hg19 9.0 MB link
ENCFF420QZL ENCFF420QZL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 transcript quantifications GRCh38 25.3 MB link
ENCFF835WIG ENCFF835WIG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 transcript quantifications GRCh38 25.4 MB link
ENCFF448VCF ENCFF448VCF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.8 MB link
ENCFF686DPK ENCFF686DPK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 29.9 MB link
ENCFF753FFS ENCFF753FFS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.2 MB link
ENCFF851ZNN ENCFF851ZNN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 transcript quantifications GRCh38 27.6 MB link
ENCFF663FRK ENCFF663FRK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 transcript quantifications hg19 25.0 MB link
ENCFF742UGA ENCFF742UGA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 transcript quantifications hg19 24.9 MB link