ENCSR625ORP
ENCSR ENCODESYNCRIP ChIP-seq on HepG2
Organism:
Homo sapiens
Experiment Types:
TF ChIP-seq
Status:
released
Contact:
Xiang-Dong Fu, UCSD
Summary
TF ChIP-seq of SYNCRIP in Homo sapiens HepG2
Overall Design
SYNCRIP ChIP-seq on HepG2
Analysis
View Data Processing
Analysis page is available for ENCSR625ORP.
ENCODE Metadata
Total file size: 21.1 GBAssay: TF ChIP-seq
Target: SYNCRIP
Biosample: Homo sapiens HepG2
Files: 64
Unique ENC file IDs: 64
File Formats
bed (18)
bigWig (18)
bigBed (14)
bam (12)
fastq (2)
Output types (10)
peaks and background as input for IDR (12)
fold change over control (9)
signal p-value (9)
alignments (6)
conservative IDR thresholded peaks (6)
IDR thresholded peaks (6)
unfiltered alignments (6)
IDR ranked peaks (4)
optimal IDR thresholded peaks (4)
reads (2)
Data Files (64)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF117CNE | ENCFF117CNE.bam | bam (alignments); assembly: GRCh38 | alignments | GRCh38 | 559.9 MB | link | |
| ENCFF348IEW | ENCFF348IEW.bam | bam (alignments); assembly: GRCh38 | alignments | GRCh38 | 457.3 MB | link | |
| ENCFF526UMU | ENCFF526UMU.bam | bam (alignments); assembly: GRCh38 | alignments | GRCh38 | 435.9 MB | link | |
| ENCFF550SVM | ENCFF550SVM.bam | bam (alignments); assembly: GRCh38 | alignments | GRCh38 | 587.6 MB | link | |
| ENCFF221UBB | ENCFF221UBB.bam | bam (alignments); assembly: hg19 | alignments | hg19 | 560.5 MB | link | |
| ENCFF880EQU | ENCFF880EQU.bam | bam (alignments); assembly: hg19 | alignments | hg19 | 436.5 MB | link | |
| ENCFF163NVI | ENCFF163NVI.bam | bam (unfiltered alignments); assembly: GRCh38 | unfiltered alignments | GRCh38 | 804.5 MB | link | |
| ENCFF306YVT | ENCFF306YVT.bam | bam (unfiltered alignments); assembly: GRCh38 | unfiltered alignments | GRCh38 | 814.6 MB | link | |
| ENCFF314EYO | ENCFF314EYO.bam | bam (unfiltered alignments); assembly: GRCh38 | unfiltered alignments | GRCh38 | 993.2 MB | link | |
| ENCFF612VOP | ENCFF612VOP.bam | bam (unfiltered alignments); assembly: GRCh38 | unfiltered alignments | GRCh38 | 1005.8 MB | link | |
| ENCFF389PUP | ENCFF389PUP.bam | bam (unfiltered alignments); assembly: hg19 | unfiltered alignments | hg19 | 811.3 MB | link | |
| ENCFF614ZUA | ENCFF614ZUA.bam | bam (unfiltered alignments); assembly: hg19 | unfiltered alignments | hg19 | 1002.0 MB | link | |
| ENCFF449IXP | ENCFF449IXP.bed | bed (conservative IDR thresholded peaks); assembly: GRCh38 | conservative IDR thresholded peaks | GRCh38 | 633.0 B | link | |
| ENCFF905CUQ | ENCFF905CUQ.bed | bed (conservative IDR thresholded peaks); assembly: GRCh38 | conservative IDR thresholded peaks | GRCh38 | 606.0 B | link | |
| ENCFF155OFK | ENCFF155OFK.bed | bed (conservative IDR thresholded peaks); assembly: hg19 | conservative IDR thresholded peaks | hg19 | 1011.0 B | link | |
| ENCFF047HOD | ENCFF047HOD.bed | bed (IDR ranked peaks); assembly: GRCh38 | IDR ranked peaks | GRCh38 | 1.6 MB | link | |
| ENCFF347VWL | ENCFF347VWL.bed | bed (IDR ranked peaks); assembly: GRCh38 | IDR ranked peaks | GRCh38 | 1.3 MB | link | |
| ENCFF516UHX | ENCFF516UHX.bed | bed (IDR ranked peaks); assembly: GRCh38 | IDR ranked peaks | GRCh38 | 155.3 KB | link | |
| ENCFF994KRL | ENCFF994KRL.bed | bed (IDR ranked peaks); assembly: GRCh38 | IDR ranked peaks | GRCh38 | 290.7 KB | link | |
| ENCFF657CNH | ENCFF657CNH.bed | bed (IDR thresholded peaks); assembly: GRCh38 | IDR thresholded peaks | GRCh38 | 711.0 B | link | |
| ENCFF686LEC | ENCFF686LEC.bed | bed (IDR thresholded peaks); assembly: GRCh38 | IDR thresholded peaks | GRCh38 | 142.0 B | link | |
| ENCFF889PPT | ENCFF889PPT.bed | bed (IDR thresholded peaks); assembly: GRCh38 | IDR thresholded peaks | GRCh38 | 130.0 B | link | |
| ENCFF157IIV | ENCFF157IIV.bed | bed (optimal IDR thresholded peaks); assembly: GRCh38 | optimal IDR thresholded peaks | GRCh38 | 969.0 B | link | |
| ENCFF380TJT | ENCFF380TJT.bed | bed (optimal IDR thresholded peaks); assembly: hg19 | optimal IDR thresholded peaks | hg19 | 1.1 KB | link | |
| ENCFF078XQP | ENCFF078XQP.bed | bed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 3.9 MB | link | |
| ENCFF153MGN | ENCFF153MGN.bed | bed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 3.5 MB | link | |
| ENCFF424XDV | ENCFF424XDV.bed | bed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 5.5 MB | link | |
| ENCFF179KYF | ENCFF179KYF.bed | bed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 5.7 MB | link | |
| ENCFF599KFI | ENCFF599KFI.bed | bed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 3.9 MB | link | |
| ENCFF890HLT | ENCFF890HLT.bed | bed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 3.7 MB | link | |
| ENCFF206QHG | ENCFF206QHG.bigBed | bigBed (conservative IDR thresholded peaks); assembly: GRCh38 | conservative IDR thresholded peaks | GRCh38 | 14.7 KB | link | |
| ENCFF534RKY | ENCFF534RKY.bigBed | bigBed (conservative IDR thresholded peaks); assembly: GRCh38 | conservative IDR thresholded peaks | GRCh38 | 59.0 KB | link | |
| ENCFF481ZYS | ENCFF481ZYS.bigBed | bigBed (conservative IDR thresholded peaks); assembly: hg19 | conservative IDR thresholded peaks | hg19 | 73.1 KB | link | |
| ENCFF597HGQ | ENCFF597HGQ.bigBed | bigBed (IDR thresholded peaks); assembly: GRCh38 | IDR thresholded peaks | GRCh38 | 19.8 KB | link | |
| ENCFF858KGI | ENCFF858KGI.bigBed | bigBed (IDR thresholded peaks); assembly: GRCh38 | IDR thresholded peaks | GRCh38 | 58.7 KB | link | |
| ENCFF926KXL | ENCFF926KXL.bigBed | bigBed (IDR thresholded peaks); assembly: GRCh38 | IDR thresholded peaks | GRCh38 | 13.8 KB | link | |
| ENCFF803TLV | ENCFF803TLV.bigBed | bigBed (optimal IDR thresholded peaks); assembly: GRCh38 | optimal IDR thresholded peaks | GRCh38 | 72.9 KB | link | |
| ENCFF327CNA | ENCFF327CNA.bigBed | bigBed (optimal IDR thresholded peaks); assembly: hg19 | optimal IDR thresholded peaks | hg19 | 73.3 KB | link | |
| ENCFF265JLS | ENCFF265JLS.bigBed | bigBed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 8.7 MB | link | |
| ENCFF271LYE | ENCFF271LYE.bigBed | bigBed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 10.9 MB | link | |
| ENCFF501MGY | ENCFF501MGY.bigBed | bigBed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 10.0 MB | link | |
| ENCFF106EAD | ENCFF106EAD.bigBed | bigBed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 10.9 MB | link | |
| ENCFF107OHH | ENCFF107OHH.bigBed | bigBed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 9.0 MB | link | |
| ENCFF434IHY | ENCFF434IHY.bigBed | bigBed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 10.0 MB | link | |
| ENCFF266OSS | ENCFF266OSS.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 537.2 MB | link | |
| ENCFF462EDE | ENCFF462EDE.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 304.2 MB | link | |
| ENCFF506GOK | ENCFF506GOK.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 359.5 MB | link | |
| ENCFF562RHU | ENCFF562RHU.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 819.8 MB | link | |
| ENCFF670MXH | ENCFF670MXH.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 809.9 MB | link | |
| ENCFF844RHW | ENCFF844RHW.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 454.9 MB | link | |
| ENCFF481DUX | ENCFF481DUX.bigWig | bigWig (fold change over control); assembly: hg19 | fold change over control | hg19 | 364.2 MB | link | |
| ENCFF709QTL | ENCFF709QTL.bigWig | bigWig (fold change over control); assembly: hg19 | fold change over control | hg19 | 304.4 MB | link | |
| ENCFF832GIC | ENCFF832GIC.bigWig | bigWig (fold change over control); assembly: hg19 | fold change over control | hg19 | 809.6 MB | link | |
| ENCFF046RLR | ENCFF046RLR.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 550.7 MB | link | |
| ENCFF231ZGI | ENCFF231ZGI.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 914.9 MB | link | |
| ENCFF515NMY | ENCFF515NMY.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 507.8 MB | link | |
| ENCFF558NMS | ENCFF558NMS.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 967.5 MB | link | |
| ENCFF868TDZ | ENCFF868TDZ.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 840.6 MB | link | |
| ENCFF938APE | ENCFF938APE.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 963.4 MB | link | |
| ENCFF780SIR | ENCFF780SIR.bigWig | bigWig (signal p-value); assembly: hg19 | signal p-value | hg19 | 1020.8 MB | link | |
| ENCFF801QND | ENCFF801QND.bigWig | bigWig (signal p-value); assembly: hg19 | signal p-value | hg19 | 504.2 MB | link | |
| ENCFF866KKE | ENCFF866KKE.bigWig | bigWig (signal p-value); assembly: hg19 | signal p-value | hg19 | 601.2 MB | link | |
| ENCFF400OAC | ENCFF400OAC.fastq | fastq (reads) | reads | 777.9 MB | link | ||
| ENCFF462CQQ | ENCFF462CQQ.fastq | fastq (reads) | reads | 632.4 MB | link |