ENCSR410MIQ
ENCSR ENCODEshRNA knockdown against RPS3 in K562 cells followed by RNA-seq. (RPS3 BGKLV13)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of RPS3 in Homo sapiens K562 expressing RNAi targeting H. sapiens RPS3
Overall Design
shRNA knockdown against RPS3 in K562 cells followed by RNA-seq. (RPS3 BGKLV13)
Analysis
View Data Processing
Analysis page is available for ENCSR410MIQ.
Dataset Citations (2)
ENCODE Metadata
Total file size: 54.8 GBAssay: shRNA RNA-seq
Target: RPS3
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens RPS3
Files: 66
Unique ENC file IDs: 66
File Formats
bigWig (40)
bam (14)
tsv (8)
fastq (4)
Output types (9)
alignments (10)
minus strand signal of all reads (10)
minus strand signal of unique reads (10)
plus strand signal of all reads (10)
plus strand signal of unique reads (10)
gene quantifications (4)
reads (4)
transcript quantifications (4)
transcriptome alignments (4)
Data Files (66)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF024NXT | ENCFF024NXT.bam | bam (alignments) | alignments | 3.1 GB | link | ||
| ENCFF077FMI | ENCFF077FMI.bam | bam (alignments) | alignments | 3.0 GB | link | ||
| ENCFF121YHY | ENCFF121YHY.bam | bam (alignments) | alignments | 2.5 GB | link | ||
| ENCFF263MAG | ENCFF263MAG.bam | bam (alignments) | alignments | 3.7 GB | link | ||
| ENCFF403FGR | ENCFF403FGR.bam | bam (alignments) | alignments | 2.5 GB | link | ||
| ENCFF580UQE | ENCFF580UQE.bam | bam (alignments) | alignments | 3.6 GB | link | ||
| ENCFF583NDS | ENCFF583NDS.bam | bam (alignments) | alignments | 2.5 GB | link | ||
| ENCFF664HRD | ENCFF664HRD.bam | bam (alignments) | alignments | 2.9 GB | link | ||
| ENCFF896HTY | ENCFF896HTY.bam | bam (alignments) | alignments | 3.1 GB | link | ||
| ENCFF985GAR | ENCFF985GAR.bam | bam (alignments) | alignments | 3.1 GB | link | ||
| ENCFF556YYH | ENCFF556YYH.bam | bam (transcriptome alignments) | transcriptome alignments | 3.4 GB | link | ||
| ENCFF733BEY | ENCFF733BEY.bam | bam (transcriptome alignments) | transcriptome alignments | 3.4 GB | link | ||
| ENCFF820OAW | ENCFF820OAW.bam | bam (transcriptome alignments) | transcriptome alignments | 4.2 GB | link | ||
| ENCFF980KAK | ENCFF980KAK.bam | bam (transcriptome alignments) | transcriptome alignments | 4.2 GB | link | ||
| ENCFF209KVG | ENCFF209KVG.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 64.4 MB | link | ||
| ENCFF232HLZ | ENCFF232HLZ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 80.2 MB | link | ||
| ENCFF265ICS | ENCFF265ICS.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 60.2 MB | link | ||
| ENCFF423BRC | ENCFF423BRC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 63.3 MB | link | ||
| ENCFF524ZSG | ENCFF524ZSG.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 69.2 MB | link | ||
| ENCFF578TEF | ENCFF578TEF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 69.8 MB | link | ||
| ENCFF583QFL | ENCFF583QFL.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 81.8 MB | link | ||
| ENCFF748MEQ | ENCFF748MEQ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 74.4 MB | link | ||
| ENCFF788RBY | ENCFF788RBY.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 69.6 MB | link | ||
| ENCFF870EUR | ENCFF870EUR.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 73.7 MB | link | ||
| ENCFF077BHY | ENCFF077BHY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 61.9 MB | link | ||
| ENCFF283JWX | ENCFF283JWX.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 68.2 MB | link | ||
| ENCFF293AKE | ENCFF293AKE.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 54.8 MB | link | ||
| ENCFF432QOK | ENCFF432QOK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 68.0 MB | link | ||
| ENCFF438WJH | ENCFF438WJH.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 72.2 MB | link | ||
| ENCFF541CNW | ENCFF541CNW.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 64.3 MB | link | ||
| ENCFF816YDF | ENCFF816YDF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 71.0 MB | link | ||
| ENCFF831WWG | ENCFF831WWG.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 58.9 MB | link | ||
| ENCFF883QTM | ENCFF883QTM.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 61.6 MB | link | ||
| ENCFF993SHC | ENCFF993SHC.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 59.3 MB | link | ||
| ENCFF060NXC | ENCFF060NXC.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 70.4 MB | link | ||
| ENCFF099BXL | ENCFF099BXL.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 64.0 MB | link | ||
| ENCFF538BTK | ENCFF538BTK.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 81.1 MB | link | ||
| ENCFF555QQY | ENCFF555QQY.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 70.5 MB | link | ||
| ENCFF618KCT | ENCFF618KCT.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 65.5 MB | link | ||
| ENCFF654QZS | ENCFF654QZS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 61.1 MB | link | ||
| ENCFF751MCV | ENCFF751MCV.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 74.5 MB | link | ||
| ENCFF863MYR | ENCFF863MYR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 75.7 MB | link | ||
| ENCFF940KNF | ENCFF940KNF.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 70.3 MB | link | ||
| ENCFF995FWW | ENCFF995FWW.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 82.8 MB | link | ||
| ENCFF099KLY | ENCFF099KLY.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 65.9 MB | link | ||
| ENCFF307USI | ENCFF307USI.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 63.2 MB | link | ||
| ENCFF335NMZ | ENCFF335NMZ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 69.5 MB | link | ||
| ENCFF336LNC | ENCFF336LNC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 70.0 MB | link | ||
| ENCFF447QYF | ENCFF447QYF.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 72.8 MB | link | ||
| ENCFF577ILC | ENCFF577ILC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 63.1 MB | link | ||
| ENCFF759XGO | ENCFF759XGO.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 60.3 MB | link | ||
| ENCFF875XRB | ENCFF875XRB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 60.5 MB | link | ||
| ENCFF937ZKW | ENCFF937ZKW.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 73.9 MB | link | ||
| ENCFF994OFZ | ENCFF994OFZ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 56.2 MB | link | ||
| ENCFF147UQH | ENCFF147UQH.fastq | fastq (reads) | reads | 1.6 GB | link | ||
| ENCFF585IHQ | ENCFF585IHQ.fastq | fastq (reads) | reads | 2.0 GB | link | ||
| ENCFF797JWP | ENCFF797JWP.fastq | fastq (reads) | reads | 1.9 GB | link | ||
| ENCFF888DTS | ENCFF888DTS.fastq | fastq (reads) | reads | 1.5 GB | link | ||
| ENCFF259FEY | ENCFF259FEY.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF506FDZ | ENCFF506FDZ.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF649SZR | ENCFF649SZR.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF720JKE | ENCFF720JKE.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF082YLH | ENCFF082YLH.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF244XNQ | ENCFF244XNQ.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF483SWX | ENCFF483SWX.tsv | tsv (transcript quantifications) | transcript quantifications | 24.8 MB | link | ||
| ENCFF638AOK | ENCFF638AOK.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link |