ENCSR622MCX
ENCSR ENCODEshRNA knockdown against U2AF2 in HepG2 cells followed by RNA-seq. (U2AF2 BGHLV14)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of U2AF2 in Homo sapiens HepG2 expressing RNAi targeting H. sapiens U2AF2
Overall Design
shRNA knockdown against U2AF2 in HepG2 cells followed by RNA-seq. (U2AF2 BGHLV14)
Analysis
View Data Processing
Analysis page is available for ENCSR622MCX.
Dataset Citations (2)
ENCODE Metadata
Total file size: 90.1 GBAssay: shRNA RNA-seq
Target: U2AF2
Biosample: Homo sapiens HepG2 expressing RNAi targeting H. sapiens U2AF2
Files: 84
Unique ENC file IDs: 84
File Formats
bigWig (48)
bam (18)
tsv (14)
fastq (4)
Output types (9)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
reads (4)
Data Files (84)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF033BTT | ENCFF033BTT.bam | bam (alignments) | alignments | 4.3 GB | link | ||
| ENCFF057UPR | ENCFF057UPR.bam | bam (alignments) | alignments | 3.6 GB | link | ||
| ENCFF089GAV | ENCFF089GAV.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF140JAW | ENCFF140JAW.bam | bam (alignments) | alignments | 3.6 GB | link | ||
| ENCFF404HLV | ENCFF404HLV.bam | bam (alignments) | alignments | 4.2 GB | link | ||
| ENCFF474VCL | ENCFF474VCL.bam | bam (alignments) | alignments | 3.4 GB | link | ||
| ENCFF516LRS | ENCFF516LRS.bam | bam (alignments) | alignments | 4.3 GB | link | ||
| ENCFF590WZR | ENCFF590WZR.bam | bam (alignments) | alignments | 4.1 GB | link | ||
| ENCFF637KSZ | ENCFF637KSZ.bam | bam (alignments) | alignments | 4.0 GB | link | ||
| ENCFF836OGF | ENCFF836OGF.bam | bam (alignments) | alignments | 4.1 GB | link | ||
| ENCFF935ZQK | ENCFF935ZQK.bam | bam (alignments) | alignments | 3.4 GB | link | ||
| ENCFF992OHI | ENCFF992OHI.bam | bam (alignments) | alignments | 3.4 GB | link | ||
| ENCFF019ZJI | ENCFF019ZJI.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF059EPG | ENCFF059EPG.bam | bam (transcriptome alignments) | transcriptome alignments | 5.4 GB | link | ||
| ENCFF527CNQ | ENCFF527CNQ.bam | bam (transcriptome alignments) | transcriptome alignments | 4.8 GB | link | ||
| ENCFF677BLS | ENCFF677BLS.bam | bam (transcriptome alignments) | transcriptome alignments | 4.8 GB | link | ||
| ENCFF759VKK | ENCFF759VKK.bam | bam (transcriptome alignments) | transcriptome alignments | 5.8 GB | link | ||
| ENCFF876VUP | ENCFF876VUP.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF127XFC | ENCFF127XFC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 79.1 MB | link | ||
| ENCFF261HBI | ENCFF261HBI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 76.5 MB | link | ||
| ENCFF313ASC | ENCFF313ASC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 88.0 MB | link | ||
| ENCFF461HSA | ENCFF461HSA.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 76.0 MB | link | ||
| ENCFF461JOB | ENCFF461JOB.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 87.4 MB | link | ||
| ENCFF485YJB | ENCFF485YJB.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 88.0 MB | link | ||
| ENCFF614FNF | ENCFF614FNF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 87.2 MB | link | ||
| ENCFF669RZP | ENCFF669RZP.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 80.6 MB | link | ||
| ENCFF769ONC | ENCFF769ONC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 87.4 MB | link | ||
| ENCFF951JKK | ENCFF951JKK.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 80.5 MB | link | ||
| ENCFF971ZGI | ENCFF971ZGI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 87.5 MB | link | ||
| ENCFF975EPA | ENCFF975EPA.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 82.0 MB | link | ||
| ENCFF081SLH | ENCFF081SLH.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 75.3 MB | link | ||
| ENCFF121UAK | ENCFF121UAK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 70.8 MB | link | ||
| ENCFF182HIO | ENCFF182HIO.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 70.4 MB | link | ||
| ENCFF236YPX | ENCFF236YPX.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 75.0 MB | link | ||
| ENCFF244CHQ | ENCFF244CHQ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.2 MB | link | ||
| ENCFF287EPZ | ENCFF287EPZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.2 MB | link | ||
| ENCFF327HDY | ENCFF327HDY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 78.8 MB | link | ||
| ENCFF435RNZ | ENCFF435RNZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.0 MB | link | ||
| ENCFF447QZO | ENCFF447QZO.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.4 MB | link | ||
| ENCFF724TJY | ENCFF724TJY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 75.3 MB | link | ||
| ENCFF787UDA | ENCFF787UDA.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.4 MB | link | ||
| ENCFF811SKE | ENCFF811SKE.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 75.0 MB | link | ||
| ENCFF186ZAE | ENCFF186ZAE.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 89.5 MB | link | ||
| ENCFF505YQR | ENCFF505YQR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 89.4 MB | link | ||
| ENCFF521DEK | ENCFF521DEK.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 90.0 MB | link | ||
| ENCFF524KWT | ENCFF524KWT.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 84.1 MB | link | ||
| ENCFF567RXA | ENCFF567RXA.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 78.0 MB | link | ||
| ENCFF663OMS | ENCFF663OMS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 90.0 MB | link | ||
| ENCFF714FUH | ENCFF714FUH.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 89.0 MB | link | ||
| ENCFF791UKG | ENCFF791UKG.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 78.6 MB | link | ||
| ENCFF845ALP | ENCFF845ALP.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 82.6 MB | link | ||
| ENCFF875ZOB | ENCFF875ZOB.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 89.2 MB | link | ||
| ENCFF884JWS | ENCFF884JWS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 82.5 MB | link | ||
| ENCFF967PCX | ENCFF967PCX.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 81.0 MB | link | ||
| ENCFF042MQR | ENCFF042MQR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 81.4 MB | link | ||
| ENCFF129YTG | ENCFF129YTG.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 82.0 MB | link | ||
| ENCFF181CAD | ENCFF181CAD.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 82.0 MB | link | ||
| ENCFF204RMA | ENCFF204RMA.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 81.7 MB | link | ||
| ENCFF231FFM | ENCFF231FFM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 77.3 MB | link | ||
| ENCFF375SWB | ENCFF375SWB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 77.8 MB | link | ||
| ENCFF527YNX | ENCFF527YNX.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 72.9 MB | link | ||
| ENCFF601ZNL | ENCFF601ZNL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 77.3 MB | link | ||
| ENCFF663VCP | ENCFF663VCP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 73.3 MB | link | ||
| ENCFF819QMV | ENCFF819QMV.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 81.8 MB | link | ||
| ENCFF889BVR | ENCFF889BVR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 77.9 MB | link | ||
| ENCFF948PHF | ENCFF948PHF.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 81.6 MB | link | ||
| ENCFF026PLZ | ENCFF026PLZ.fastq | fastq (reads) | reads | 2.2 GB | link | ||
| ENCFF235FRZ | ENCFF235FRZ.fastq | fastq (reads) | reads | 2.3 GB | link | ||
| ENCFF470BBN | ENCFF470BBN.fastq | fastq (reads) | reads | 2.4 GB | link | ||
| ENCFF824GIZ | ENCFF824GIZ.fastq | fastq (reads) | reads | 2.3 GB | link | ||
| ENCFF078OUB | ENCFF078OUB.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF092HGO | ENCFF092HGO.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF260JAY | ENCFF260JAY.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF604BQZ | ENCFF604BQZ.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF794GZQ | ENCFF794GZQ.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF925NSQ | ENCFF925NSQ.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF004PYT | ENCFF004PYT.tsv | tsv (transcript quantifications) | transcript quantifications | 27.3 MB | link | ||
| ENCFF112WRB | ENCFF112WRB.tsv | tsv (transcript quantifications) | transcript quantifications | 27.3 MB | link | ||
| ENCFF325UMP | ENCFF325UMP.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF413ZZD | ENCFF413ZZD.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF594RIK | ENCFF594RIK.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF774YKC | ENCFF774YKC.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF816TJP | ENCFF816TJP.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF983PDV | ENCFF983PDV.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link |