ENCSR061SFU
ENCSR ENCODEInitial nucleus fractions on HepG2 Long Total from Lecuyer
Organism:
Homo sapiens
Experiment Types:
total RNA-seq
Status:
released
Contact:
Eric Lécuyer, IRCM
Summary
total RNA-seq of in Homo sapiens HepG2 nuclear fraction
Overall Design
Initial nucleus fractions on HepG2 Long Total from Lecuyer
Analysis
View Data Processing
Analysis page is available for ENCSR061SFU.
ENCODE Metadata
Total file size: 43.5 GBAssay: total RNA-seq
Biosample: Homo sapiens HepG2 nuclear fraction
Files: 54
Unique ENC file IDs: 54
File Formats
bigWig (24)
tsv (14)
bam (12)
fastq (4)
Output types (9)
transcript quantifications (8)
alignments (6)
gene quantifications (6)
minus strand signal of all reads (6)
minus strand signal of unique reads (6)
plus strand signal of all reads (6)
plus strand signal of unique reads (6)
transcriptome alignments (6)
reads (4)
Data Files (54)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF081MWH | ENCFF081MWH.bam | bam (alignments) | alignments | 3.4 GB | link | ||
| ENCFF254TPI | ENCFF254TPI.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF256ESO | ENCFF256ESO.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF523EQM | ENCFF523EQM.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF552ETT | ENCFF552ETT.bam | bam (alignments) | alignments | 3.7 GB | link | ||
| ENCFF760IDU | ENCFF760IDU.bam | bam (alignments) | alignments | 3.7 GB | link | ||
| ENCFF012GZQ | ENCFF012GZQ.bam | bam (transcriptome alignments) | transcriptome alignments | 2.2 GB | link | ||
| ENCFF048XMP | ENCFF048XMP.bam | bam (transcriptome alignments) | transcriptome alignments | 2.3 GB | link | ||
| ENCFF207NOL | ENCFF207NOL.bam | bam (transcriptome alignments) | transcriptome alignments | 2.4 GB | link | ||
| ENCFF649VKD | ENCFF649VKD.bam | bam (transcriptome alignments) | transcriptome alignments | 2.2 GB | link | ||
| ENCFF790ATC | ENCFF790ATC.bam | bam (transcriptome alignments) | transcriptome alignments | 2.3 GB | link | ||
| ENCFF876OGS | ENCFF876OGS.bam | bam (transcriptome alignments) | transcriptome alignments | 2.4 GB | link | ||
| ENCFF277ZWC | ENCFF277ZWC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 193.2 MB | link | ||
| ENCFF429SXX | ENCFF429SXX.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 198.9 MB | link | ||
| ENCFF739GBE | ENCFF739GBE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 200.0 MB | link | ||
| ENCFF816EIE | ENCFF816EIE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 194.6 MB | link | ||
| ENCFF830OXU | ENCFF830OXU.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 194.6 MB | link | ||
| ENCFF985WWX | ENCFF985WWX.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 200.0 MB | link | ||
| ENCFF021USB | ENCFF021USB.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 178.0 MB | link | ||
| ENCFF030CZY | ENCFF030CZY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 177.4 MB | link | ||
| ENCFF200ARP | ENCFF200ARP.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 172.3 MB | link | ||
| ENCFF614OZP | ENCFF614OZP.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 173.1 MB | link | ||
| ENCFF753LED | ENCFF753LED.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 172.5 MB | link | ||
| ENCFF935KNY | ENCFF935KNY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 177.8 MB | link | ||
| ENCFF008CDN | ENCFF008CDN.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 198.3 MB | link | ||
| ENCFF089MWQ | ENCFF089MWQ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 198.3 MB | link | ||
| ENCFF179XKO | ENCFF179XKO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 196.4 MB | link | ||
| ENCFF327LIL | ENCFF327LIL.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 204.0 MB | link | ||
| ENCFF329UTY | ENCFF329UTY.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 203.9 MB | link | ||
| ENCFF985VPD | ENCFF985VPD.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 202.4 MB | link | ||
| ENCFF004ONE | ENCFF004ONE.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 177.7 MB | link | ||
| ENCFF166LEP | ENCFF166LEP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 183.0 MB | link | ||
| ENCFF172MMV | ENCFF172MMV.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 177.5 MB | link | ||
| ENCFF593IWR | ENCFF593IWR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 178.4 MB | link | ||
| ENCFF690NYT | ENCFF690NYT.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 183.6 MB | link | ||
| ENCFF994NAN | ENCFF994NAN.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 183.5 MB | link | ||
| ENCFF417ZEN | ENCFF417ZEN.fastq | fastq (reads) | reads | 1011.5 MB | link | ||
| ENCFF646ZDN | ENCFF646ZDN.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF720EGG | ENCFF720EGG.fastq | fastq (reads) | reads | 974.4 MB | link | ||
| ENCFF802YBN | ENCFF802YBN.fastq | fastq (reads) | reads | 954.3 MB | link | ||
| ENCFF201FUJ | ENCFF201FUJ.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF343MLK | ENCFF343MLK.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF646AQL | ENCFF646AQL.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF649XOG | ENCFF649XOG.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF790EGR | ENCFF790EGR.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF958HDM | ENCFF958HDM.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF185KBE | ENCFF185KBE.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF438DJA | ENCFF438DJA.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF454VRB | ENCFF454VRB.tsv | tsv (transcript quantifications) | transcript quantifications | 27.5 MB | link | ||
| ENCFF534UDU | ENCFF534UDU.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF651VFN | ENCFF651VFN.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF711KJY | ENCFF711KJY.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF832MBL | ENCFF832MBL.tsv | tsv (transcript quantifications) | transcript quantifications | 27.5 MB | link | ||
| ENCFF906CSU | ENCFF906CSU.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link |