ENCSR667JTA
ENCSR ENCODERNA Evaluation MCF7 Long Total from Graveley
Organism:
Homo sapiens
Experiment Types:
total RNA-seq
Status:
revoked
Contact:
Brenton Graveley, UConn
Summary
total RNA-seq of in Homo sapiens MCF-7
Overall Design
RNA Evaluation MCF7 Long Total from Graveley
Analysis
View Data Processing
Analysis page is available for ENCSR667JTA.
ENCODE Metadata
Total file size: 94.6 GBAssay: total RNA-seq
Biosample: Homo sapiens MCF-7
Files: 66
Unique ENC file IDs: 66
File Formats
bigWig (40)
bam (14)
tsv (8)
fastq (4)
Output types (9)
alignments (10)
minus strand signal of all reads (10)
minus strand signal of unique reads (10)
plus strand signal of all reads (10)
plus strand signal of unique reads (10)
gene quantifications (4)
reads (4)
transcript quantifications (4)
transcriptome alignments (4)
Data Files (66)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF002DJW | ENCFF002DJW.bam | bam (alignments) | alignments | 4.8 GB | link | ||
| ENCFF002DJZ | ENCFF002DJZ.bam | bam (alignments) | alignments | 5.3 GB | link | ||
| ENCFF317FWZ | ENCFF317FWZ.bam | bam (alignments) | alignments | 6.9 GB | link | ||
| ENCFF335BYM | ENCFF335BYM.bam | bam (alignments) | alignments | 6.3 GB | link | ||
| ENCFF345YNS | ENCFF345YNS.bam | bam (alignments) | alignments | 6.3 GB | link | ||
| ENCFF451FWL | ENCFF451FWL.bam | bam (alignments) | alignments | 5.6 GB | link | ||
| ENCFF493RBQ | ENCFF493RBQ.bam | bam (alignments) | alignments | 5.3 GB | link | ||
| ENCFF529ZFX | ENCFF529ZFX.bam | bam (alignments) | alignments | 4.8 GB | link | ||
| ENCFF570GGT | ENCFF570GGT.bam | bam (alignments) | alignments | 5.2 GB | link | ||
| ENCFF704YLN | ENCFF704YLN.bam | bam (alignments) | alignments | 5.8 GB | link | ||
| ENCFF112GKJ | ENCFF112GKJ.bam | bam (transcriptome alignments) | transcriptome alignments | 4.6 GB | link | ||
| ENCFF353UXW | ENCFF353UXW.bam | bam (transcriptome alignments) | transcriptome alignments | 5.2 GB | link | ||
| ENCFF419FNH | ENCFF419FNH.bam | bam (transcriptome alignments) | transcriptome alignments | 5.3 GB | link | ||
| ENCFF616ETE | ENCFF616ETE.bam | bam (transcriptome alignments) | transcriptome alignments | 4.7 GB | link | ||
| ENCFF002DIE | ENCFF002DIE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 134.0 MB | link | ||
| ENCFF002DII | ENCFF002DII.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 137.7 MB | link | ||
| ENCFF035TAA | ENCFF035TAA.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 148.8 MB | link | ||
| ENCFF191CFC | ENCFF191CFC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 158.8 MB | link | ||
| ENCFF518MRS | ENCFF518MRS.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 145.3 MB | link | ||
| ENCFF569IOV | ENCFF569IOV.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 159.6 MB | link | ||
| ENCFF641HBH | ENCFF641HBH.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 149.3 MB | link | ||
| ENCFF722CQF | ENCFF722CQF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 153.0 MB | link | ||
| ENCFF848GCJ | ENCFF848GCJ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 161.8 MB | link | ||
| ENCFF899LAU | ENCFF899LAU.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 164.8 MB | link | ||
| ENCFF002DIF | ENCFF002DIF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 122.7 MB | link | ||
| ENCFF002DIJ | ENCFF002DIJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 127.0 MB | link | ||
| ENCFF038BIB | ENCFF038BIB.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 137.6 MB | link | ||
| ENCFF270EXR | ENCFF270EXR.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 139.1 MB | link | ||
| ENCFF277HAX | ENCFF277HAX.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 148.1 MB | link | ||
| ENCFF401TCZ | ENCFF401TCZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 133.6 MB | link | ||
| ENCFF546OLR | ENCFF546OLR.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 136.4 MB | link | ||
| ENCFF718UZR | ENCFF718UZR.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 144.5 MB | link | ||
| ENCFF778ZIJ | ENCFF778ZIJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 149.0 MB | link | ||
| ENCFF866OVQ | ENCFF866OVQ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 143.5 MB | link | ||
| ENCFF002DIG | ENCFF002DIG.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 140.6 MB | link | ||
| ENCFF002DIK | ENCFF002DIK.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 144.5 MB | link | ||
| ENCFF008ZSM | ENCFF008ZSM.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 166.0 MB | link | ||
| ENCFF137IBA | ENCFF137IBA.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 169.0 MB | link | ||
| ENCFF351CHM | ENCFF351CHM.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 156.4 MB | link | ||
| ENCFF430FQX | ENCFF430FQX.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 160.4 MB | link | ||
| ENCFF582JUZ | ENCFF582JUZ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 172.0 MB | link | ||
| ENCFF721KHP | ENCFF721KHP.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 155.9 MB | link | ||
| ENCFF745MXT | ENCFF745MXT.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 166.8 MB | link | ||
| ENCFF879SOD | ENCFF879SOD.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 152.2 MB | link | ||
| ENCFF002DIH | ENCFF002DIH.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 130.7 MB | link | ||
| ENCFF002DIL | ENCFF002DIL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 135.1 MB | link | ||
| ENCFF004FKK | ENCFF004FKK.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 157.0 MB | link | ||
| ENCFF316HKU | ENCFF316HKU.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 153.2 MB | link | ||
| ENCFF396XTM | ENCFF396XTM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 147.5 MB | link | ||
| ENCFF426WXY | ENCFF426WXY.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 152.2 MB | link | ||
| ENCFF464HSB | ENCFF464HSB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 141.7 MB | link | ||
| ENCFF483XAC | ENCFF483XAC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 145.7 MB | link | ||
| ENCFF793PMY | ENCFF793PMY.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 157.8 MB | link | ||
| ENCFF813ICX | ENCFF813ICX.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 144.7 MB | link | ||
| ENCFF002DKJ | ENCFF002DKJ.fastq | fastq (reads) | reads | 3.0 GB | link | ||
| ENCFF002DKK | ENCFF002DKK.fastq | fastq (reads) | reads | 3.0 GB | link | ||
| ENCFF002DKN | ENCFF002DKN.fastq | fastq (reads) | reads | 3.3 GB | link | ||
| ENCFF002DKP | ENCFF002DKP.fastq | fastq (reads) | reads | 3.3 GB | link | ||
| ENCFF061AQT | ENCFF061AQT.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF151JZX | ENCFF151JZX.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF373TQN | ENCFF373TQN.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF999MLO | ENCFF999MLO.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF615MUV | ENCFF615MUV.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF642XSE | ENCFF642XSE.tsv | tsv (transcript quantifications) | transcript quantifications | 25.4 MB | link | ||
| ENCFF703QWZ | ENCFF703QWZ.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF881UNE | ENCFF881UNE.tsv | tsv (transcript quantifications) | transcript quantifications | 25.4 MB | link |