ENCSR470PRV
ENCSR ENCODERNA-seq on K562 cells treated with an shRNA knockdown against HNRNPC. (K-HNRNPC-25B)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
released
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of HNRNPC in Homo sapiens K562 expressing RNAi targeting H. sapiens HNRNPC
Overall Design
RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPC. (K-HNRNPC-25B)
Analysis
View Data Processing
Analysis page is available for ENCSR470PRV.
Dataset Citations (2)
ENCODE Metadata
Total file size: 88.5 GBAssay: shRNA RNA-seq
Target: HNRNPC
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens HNRNPC
Files: 84
Unique ENC file IDs: 84
File Formats
bigWig (48)
bam (18)
tsv (14)
fastq (4)
Output types (9)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
reads (4)
Data Files (84)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF002BSY | ENCFF002BSY.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF002BSZ | ENCFF002BSZ.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF108CCN | ENCFF108CCN.bam | bam (alignments) | alignments | 4.1 GB | link | ||
| ENCFF216WLB | ENCFF216WLB.bam | bam (alignments) | alignments | 4.1 GB | link | ||
| ENCFF217BII | ENCFF217BII.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF295YUB | ENCFF295YUB.bam | bam (alignments) | alignments | 4.6 GB | link | ||
| ENCFF350AUL | ENCFF350AUL.bam | bam (alignments) | alignments | 6.3 GB | link | ||
| ENCFF474VND | ENCFF474VND.bam | bam (alignments) | alignments | 5.1 GB | link | ||
| ENCFF835KJW | ENCFF835KJW.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF859QBQ | ENCFF859QBQ.bam | bam (alignments) | alignments | 6.3 GB | link | ||
| ENCFF885OGZ | ENCFF885OGZ.bam | bam (alignments) | alignments | 5.6 GB | link | ||
| ENCFF999TAA | ENCFF999TAA.bam | bam (alignments) | alignments | 5.6 GB | link | ||
| ENCFF274FGG | ENCFF274FGG.bam | bam (transcriptome alignments) | transcriptome alignments | 3.3 GB | link | ||
| ENCFF319GDC | ENCFF319GDC.bam | bam (transcriptome alignments) | transcriptome alignments | 3.5 GB | link | ||
| ENCFF382UJX | ENCFF382UJX.bam | bam (transcriptome alignments) | transcriptome alignments | 3.4 GB | link | ||
| ENCFF828YYJ | ENCFF828YYJ.bam | bam (transcriptome alignments) | transcriptome alignments | 3.6 GB | link | ||
| ENCFF962JDY | ENCFF962JDY.bam | bam (transcriptome alignments) | transcriptome alignments | 3.2 GB | link | ||
| ENCFF991DJD | ENCFF991DJD.bam | bam (transcriptome alignments) | transcriptome alignments | 3.1 GB | link | ||
| ENCFF002BOE | ENCFF002BOE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 75.2 MB | link | ||
| ENCFF002BOI | ENCFF002BOI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 73.7 MB | link | ||
| ENCFF058CIH | ENCFF058CIH.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 94.2 MB | link | ||
| ENCFF144OMI | ENCFF144OMI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 85.9 MB | link | ||
| ENCFF153KBM | ENCFF153KBM.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 83.9 MB | link | ||
| ENCFF249BCL | ENCFF249BCL.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 92.8 MB | link | ||
| ENCFF250XTT | ENCFF250XTT.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 94.2 MB | link | ||
| ENCFF487SQX | ENCFF487SQX.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 84.6 MB | link | ||
| ENCFF638CXU | ENCFF638CXU.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 95.3 MB | link | ||
| ENCFF672NEJ | ENCFF672NEJ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 94.2 MB | link | ||
| ENCFF679YYD | ENCFF679YYD.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 85.5 MB | link | ||
| ENCFF758YBX | ENCFF758YBX.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 95.3 MB | link | ||
| ENCFF002BOF | ENCFF002BOF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 70.2 MB | link | ||
| ENCFF002BOJ | ENCFF002BOJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 68.3 MB | link | ||
| ENCFF082ZNP | ENCFF082ZNP.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 78.6 MB | link | ||
| ENCFF118SVQ | ENCFF118SVQ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.3 MB | link | ||
| ENCFF208AOP | ENCFF208AOP.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 84.1 MB | link | ||
| ENCFF243SHW | ENCFF243SHW.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 83.6 MB | link | ||
| ENCFF271XKD | ENCFF271XKD.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 85.2 MB | link | ||
| ENCFF521JXV | ENCFF521JXV.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 83.8 MB | link | ||
| ENCFF558ZOS | ENCFF558ZOS.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.1 MB | link | ||
| ENCFF627FVP | ENCFF627FVP.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 82.9 MB | link | ||
| ENCFF760TIO | ENCFF760TIO.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 78.9 MB | link | ||
| ENCFF910VNB | ENCFF910VNB.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 83.9 MB | link | ||
| ENCFF002BOG | ENCFF002BOG.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 75.5 MB | link | ||
| ENCFF002BOK | ENCFF002BOK.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 73.8 MB | link | ||
| ENCFF142GOS | ENCFF142GOS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 85.0 MB | link | ||
| ENCFF187DFL | ENCFF187DFL.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 94.3 MB | link | ||
| ENCFF404DJZ | ENCFF404DJZ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.3 MB | link | ||
| ENCFF416HRK | ENCFF416HRK.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 94.6 MB | link | ||
| ENCFF502UZZ | ENCFF502UZZ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 94.6 MB | link | ||
| ENCFF603INL | ENCFF603INL.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 86.9 MB | link | ||
| ENCFF667MAU | ENCFF667MAU.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 85.4 MB | link | ||
| ENCFF858OJF | ENCFF858OJF.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 94.6 MB | link | ||
| ENCFF876JLG | ENCFF876JLG.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 94.3 MB | link | ||
| ENCFF993PJO | ENCFF993PJO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 84.7 MB | link | ||
| ENCFF002BOH | ENCFF002BOH.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 71.1 MB | link | ||
| ENCFF002BOL | ENCFF002BOL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 69.1 MB | link | ||
| ENCFF129DZV | ENCFF129DZV.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 79.3 MB | link | ||
| ENCFF321MPR | ENCFF321MPR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 85.1 MB | link | ||
| ENCFF342EPB | ENCFF342EPB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 85.3 MB | link | ||
| ENCFF586ELB | ENCFF586ELB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 79.3 MB | link | ||
| ENCFF598KAN | ENCFF598KAN.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 84.3 MB | link | ||
| ENCFF773FPV | ENCFF773FPV.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 83.6 MB | link | ||
| ENCFF805IBV | ENCFF805IBV.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 79.9 MB | link | ||
| ENCFF859YQU | ENCFF859YQU.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 84.1 MB | link | ||
| ENCFF899RNJ | ENCFF899RNJ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 80.2 MB | link | ||
| ENCFF988HWR | ENCFF988HWR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 85.3 MB | link | ||
| ENCFF002BZZ | ENCFF002BZZ.fastq | fastq (reads) | reads | 2.1 GB | link | ||
| ENCFF002CAA | ENCFF002CAA.fastq | fastq (reads) | reads | 2.2 GB | link | ||
| ENCFF002CAB | ENCFF002CAB.fastq | fastq (reads) | reads | 2.1 GB | link | ||
| ENCFF002CAC | ENCFF002CAC.fastq | fastq (reads) | reads | 2.1 GB | link | ||
| ENCFF041MXB | ENCFF041MXB.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF134HVA | ENCFF134HVA.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF520DWR | ENCFF520DWR.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF624OUC | ENCFF624OUC.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF676HBR | ENCFF676HBR.tsv | tsv (gene quantifications) | gene quantifications | 10.3 MB | link | ||
| ENCFF973MZG | ENCFF973MZG.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF264PDH | ENCFF264PDH.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF304ABQ | ENCFF304ABQ.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF329DAB | ENCFF329DAB.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF397IGM | ENCFF397IGM.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF609LTE | ENCFF609LTE.tsv | tsv (transcript quantifications) | transcript quantifications | 27.3 MB | link | ||
| ENCFF883FLQ | ENCFF883FLQ.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF890UTA | ENCFF890UTA.tsv | tsv (transcript quantifications) | transcript quantifications | 27.3 MB | link | ||
| ENCFF964YJP | ENCFF964YJP.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link |