ENCSR468ION
ENCSR ENCODERNA Evaluation HepG2 Long Total from Graveley
Organism:
Homo sapiens
Experiment Types:
total RNA-seq
Status:
revoked
Contact:
Brenton Graveley, UConn
Summary
total RNA-seq of in Homo sapiens HepG2
Overall Design
RNA Evaluation HepG2 Long Total from Graveley
Analysis
View Data Processing
Analysis page is available for ENCSR468ION.
ENCODE Metadata
Total file size: 85.4 GBAssay: total RNA-seq
Biosample: Homo sapiens HepG2
Files: 66
Unique ENC file IDs: 66
File Formats
bigWig (40)
bam (14)
tsv (8)
fastq (4)
Output types (9)
alignments (10)
minus strand signal of all reads (10)
minus strand signal of unique reads (10)
plus strand signal of all reads (10)
plus strand signal of unique reads (10)
gene quantifications (4)
reads (4)
transcript quantifications (4)
transcriptome alignments (4)
Data Files (66)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF079HAB | ENCFF079HAB.bam | bam (alignments); assembly: GRCh38; genome annotation: V24 | alignments | GRCh38 | 5.9 GB | link | |
| ENCFF137HMJ | ENCFF137HMJ.bam | bam (alignments); assembly: GRCh38; genome annotation: V24 | alignments | GRCh38 | 4.7 GB | link | |
| ENCFF480CTU | ENCFF480CTU.bam | bam (alignments); assembly: GRCh38; genome annotation: V24 | alignments | GRCh38 | 5.7 GB | link | |
| ENCFF732SIO | ENCFF732SIO.bam | bam (alignments); assembly: GRCh38; genome annotation: V24 | alignments | GRCh38 | 4.8 GB | link | |
| ENCFF002DKB | ENCFF002DKB.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 4.3 GB | link | |
| ENCFF002DKD | ENCFF002DKD.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 4.6 GB | link | |
| ENCFF057DJH | ENCFF057DJH.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 4.6 GB | link | |
| ENCFF268FAS | ENCFF268FAS.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 5.2 GB | link | |
| ENCFF438UHS | ENCFF438UHS.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 5.5 GB | link | |
| ENCFF673FWU | ENCFF673FWU.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 4.3 GB | link | |
| ENCFF124XMK | ENCFF124XMK.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 | transcriptome alignments | GRCh38 | 4.5 GB | link | |
| ENCFF350ICX | ENCFF350ICX.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 | transcriptome alignments | GRCh38 | 5.0 GB | link | |
| ENCFF117HQL | ENCFF117HQL.bam | bam (transcriptome alignments); assembly: hg19; genome annotation: V19 | transcriptome alignments | hg19 | 5.0 GB | link | |
| ENCFF438JGJ | ENCFF438JGJ.bam | bam (transcriptome alignments); assembly: hg19; genome annotation: V19 | transcriptome alignments | hg19 | 4.5 GB | link | |
| ENCFF273HBE | ENCFF273HBE.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of all reads | GRCh38 | 129.9 MB | link | |
| ENCFF685NGZ | ENCFF685NGZ.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of all reads | GRCh38 | 143.7 MB | link | |
| ENCFF906WKV | ENCFF906WKV.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of all reads | GRCh38 | 136.8 MB | link | |
| ENCFF936COF | ENCFF936COF.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of all reads | GRCh38 | 150.1 MB | link | |
| ENCFF002DIM | ENCFF002DIM.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 121.2 MB | link | |
| ENCFF002DIR | ENCFF002DIR.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 125.0 MB | link | |
| ENCFF318GGC | ENCFF318GGC.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 133.8 MB | link | |
| ENCFF419WBE | ENCFF419WBE.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 148.8 MB | link | |
| ENCFF531VIC | ENCFF531VIC.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 144.8 MB | link | |
| ENCFF788GIX | ENCFF788GIX.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 139.6 MB | link | |
| ENCFF139FFA | ENCFF139FFA.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of unique reads | GRCh38 | 129.5 MB | link | |
| ENCFF628IYY | ENCFF628IYY.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of unique reads | GRCh38 | 134.7 MB | link | |
| ENCFF797OWO | ENCFF797OWO.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of unique reads | GRCh38 | 129.0 MB | link | |
| ENCFF803AAW | ENCFF803AAW.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of unique reads | GRCh38 | 123.1 MB | link | |
| ENCFF002DIN | ENCFF002DIN.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 112.8 MB | link | |
| ENCFF002DIS | ENCFF002DIS.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 116.7 MB | link | |
| ENCFF093LJH | ENCFF093LJH.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 128.7 MB | link | |
| ENCFF677JVI | ENCFF677JVI.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 129.9 MB | link | |
| ENCFF754HGP | ENCFF754HGP.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 125.1 MB | link | |
| ENCFF802KDH | ENCFF802KDH.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 136.2 MB | link | |
| ENCFF237AOV | ENCFF237AOV.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of all reads | GRCh38 | 132.2 MB | link | |
| ENCFF462EJO | ENCFF462EJO.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of all reads | GRCh38 | 153.4 MB | link | |
| ENCFF570UKL | ENCFF570UKL.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of all reads | GRCh38 | 143.7 MB | link | |
| ENCFF804GQX | ENCFF804GQX.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of all reads | GRCh38 | 139.6 MB | link | |
| ENCFF002DIO | ENCFF002DIO.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 123.2 MB | link | |
| ENCFF002DIT | ENCFF002DIT.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 127.2 MB | link | |
| ENCFF596NGP | ENCFF596NGP.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 144.6 MB | link | |
| ENCFF639CFP | ENCFF639CFP.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 140.2 MB | link | |
| ENCFF644ZYX | ENCFF644ZYX.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 136.8 MB | link | |
| ENCFF715NSW | ENCFF715NSW.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 151.8 MB | link | |
| ENCFF131CUF | ENCFF131CUF.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of unique reads | GRCh38 | 136.2 MB | link | |
| ENCFF195UUV | ENCFF195UUV.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of unique reads | GRCh38 | 126.6 MB | link | |
| ENCFF690EXX | ENCFF690EXX.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of unique reads | GRCh38 | 130.3 MB | link | |
| ENCFF861CWQ | ENCFF861CWQ.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of unique reads | GRCh38 | 133.4 MB | link | |
| ENCFF002DIP | ENCFF002DIP.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 115.7 MB | link | |
| ENCFF002DIU | ENCFF002DIU.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 119.7 MB | link | |
| ENCFF205SVY | ENCFF205SVY.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 128.9 MB | link | |
| ENCFF213LGU | ENCFF213LGU.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 137.7 MB | link | |
| ENCFF499TLV | ENCFF499TLV.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 131.4 MB | link | |
| ENCFF807UPE | ENCFF807UPE.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 132.5 MB | link | |
| ENCFF002DJH | ENCFF002DJH.fastq | fastq (reads) | reads | 2.8 GB | link | ||
| ENCFF002DJU | ENCFF002DJU.fastq | fastq (reads) | reads | 2.8 GB | link | ||
| ENCFF002DJV | ENCFF002DJV.fastq | fastq (reads) | reads | 3.0 GB | link | ||
| ENCFF002DJX | ENCFF002DJX.fastq | fastq (reads) | reads | 3.0 GB | link | ||
| ENCFF051TCU | ENCFF051TCU.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 | gene quantifications | GRCh38 | 9.5 MB | link | |
| ENCFF073DUS | ENCFF073DUS.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 | gene quantifications | GRCh38 | 9.4 MB | link | |
| ENCFF824FTM | ENCFF824FTM.tsv | tsv (gene quantifications); assembly: hg19; genome annotation: V19 | gene quantifications | hg19 | 9.1 MB | link | |
| ENCFF829OMN | ENCFF829OMN.tsv | tsv (gene quantifications); assembly: hg19; genome annotation: V19 | gene quantifications | hg19 | 9.1 MB | link | |
| ENCFF108CRE | ENCFF108CRE.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 | transcript quantifications | GRCh38 | 25.4 MB | link | |
| ENCFF314DNX | ENCFF314DNX.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 | transcript quantifications | GRCh38 | 25.4 MB | link | |
| ENCFF789CKX | ENCFF789CKX.tsv | tsv (transcript quantifications); assembly: hg19; genome annotation: V19 | transcript quantifications | hg19 | 25.0 MB | link | |
| ENCFF903HHJ | ENCFF903HHJ.tsv | tsv (transcript quantifications); assembly: hg19; genome annotation: V19 | transcript quantifications | hg19 | 25.0 MB | link |