ENCSR040YBR
ENCSR ENCODEInitial nucleus fractions on K562 Long Total from Lecuyer
Organism:
Homo sapiens
Experiment Types:
total RNA-seq
Status:
released
Contact:
Eric Lécuyer, IRCM
Summary
total RNA-seq of in Homo sapiens K562 nuclear fraction
Overall Design
Initial nucleus fractions on K562 Long Total from Lecuyer
Analysis
View Data Processing
Analysis page is available for ENCSR040YBR.
ENCODE Metadata
Total file size: 39.2 GBAssay: total RNA-seq
Biosample: Homo sapiens K562 nuclear fraction
Files: 54
Unique ENC file IDs: 54
File Formats
bigWig (24)
tsv (14)
bam (12)
fastq (4)
Output types (9)
transcript quantifications (8)
alignments (6)
gene quantifications (6)
minus strand signal of all reads (6)
minus strand signal of unique reads (6)
plus strand signal of all reads (6)
plus strand signal of unique reads (6)
transcriptome alignments (6)
reads (4)
Data Files (54)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF198UFI | ENCFF198UFI.bam | bam (alignments); assembly: GRCh38; genome annotation: V24 | alignments | GRCh38 | 3.0 GB | link | |
| ENCFF677JVE | ENCFF677JVE.bam | bam (alignments); assembly: GRCh38; genome annotation: V24 | alignments | GRCh38 | 3.1 GB | link | |
| ENCFF473DXC | ENCFF473DXC.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 3.1 GB | link | |
| ENCFF744YBC | ENCFF744YBC.bam | bam (alignments); assembly: GRCh38; genome annotation: V29 | alignments | GRCh38 | 3.0 GB | link | |
| ENCFF226QAW | ENCFF226QAW.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 2.9 GB | link | |
| ENCFF552FTX | ENCFF552FTX.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 2.9 GB | link | |
| ENCFF388XZI | ENCFF388XZI.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 | transcriptome alignments | GRCh38 | 2.2 GB | link | |
| ENCFF541DQY | ENCFF541DQY.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 | transcriptome alignments | GRCh38 | 2.1 GB | link | |
| ENCFF271YRF | ENCFF271YRF.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 | transcriptome alignments | GRCh38 | 2.4 GB | link | |
| ENCFF499OFN | ENCFF499OFN.bam | bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 | transcriptome alignments | GRCh38 | 2.6 GB | link | |
| ENCFF782DGV | ENCFF782DGV.bam | bam (transcriptome alignments); assembly: hg19; genome annotation: V19 | transcriptome alignments | hg19 | 2.0 GB | link | |
| ENCFF895IWM | ENCFF895IWM.bam | bam (transcriptome alignments); assembly: hg19; genome annotation: V19 | transcriptome alignments | hg19 | 2.2 GB | link | |
| ENCFF153BMC | ENCFF153BMC.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of all reads | GRCh38 | 148.8 MB | link | |
| ENCFF952ADA | ENCFF952ADA.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of all reads | GRCh38 | 145.1 MB | link | |
| ENCFF532OEW | ENCFF532OEW.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of all reads | GRCh38 | 148.7 MB | link | |
| ENCFF735QOT | ENCFF735QOT.bigWig | bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of all reads | GRCh38 | 145.1 MB | link | |
| ENCFF013XRR | ENCFF013XRR.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 143.5 MB | link | |
| ENCFF276LQD | ENCFF276LQD.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 146.5 MB | link | |
| ENCFF885ATE | ENCFF885ATE.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of unique reads | GRCh38 | 129.6 MB | link | |
| ENCFF909SHV | ENCFF909SHV.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | minus strand signal of unique reads | GRCh38 | 124.8 MB | link | |
| ENCFF414HIB | ENCFF414HIB.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 129.5 MB | link | |
| ENCFF416XTL | ENCFF416XTL.bigWig | bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | minus strand signal of unique reads | GRCh38 | 125.9 MB | link | |
| ENCFF184BFK | ENCFF184BFK.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 126.0 MB | link | |
| ENCFF659VSH | ENCFF659VSH.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 128.2 MB | link | |
| ENCFF147CKK | ENCFF147CKK.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of all reads | GRCh38 | 150.2 MB | link | |
| ENCFF531OHK | ENCFF531OHK.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of all reads | GRCh38 | 146.3 MB | link | |
| ENCFF002JUR | ENCFF002JUR.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of all reads | GRCh38 | 150.2 MB | link | |
| ENCFF650EIZ | ENCFF650EIZ.bigWig | bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of all reads | GRCh38 | 146.3 MB | link | |
| ENCFF233LWH | ENCFF233LWH.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 144.1 MB | link | |
| ENCFF803TCH | ENCFF803TCH.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 147.3 MB | link | |
| ENCFF722YSW | ENCFF722YSW.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of unique reads | GRCh38 | 132.2 MB | link | |
| ENCFF839FCB | ENCFF839FCB.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 | plus strand signal of unique reads | GRCh38 | 127.1 MB | link | |
| ENCFF191OGW | ENCFF191OGW.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 132.1 MB | link | |
| ENCFF444LLL | ENCFF444LLL.bigWig | bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 | plus strand signal of unique reads | GRCh38 | 128.2 MB | link | |
| ENCFF109OWN | ENCFF109OWN.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 128.2 MB | link | |
| ENCFF312PTD | ENCFF312PTD.bigWig | bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 | plus strand signal of unique reads | hg19 | 130.6 MB | link | |
| ENCFF234ZAX | ENCFF234ZAX.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF415QDZ | ENCFF415QDZ.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF716GIG | ENCFF716GIG.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF786CWY | ENCFF786CWY.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF182XEY | ENCFF182XEY.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 | gene quantifications | GRCh38 | 9.5 MB | link | |
| ENCFF477XRV | ENCFF477XRV.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 | gene quantifications | GRCh38 | 9.5 MB | link | |
| ENCFF051DBP | ENCFF051DBP.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 | gene quantifications | GRCh38 | 10.4 MB | link | |
| ENCFF973GEQ | ENCFF973GEQ.tsv | tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 | gene quantifications | GRCh38 | 10.4 MB | link | |
| ENCFF087PFX | ENCFF087PFX.tsv | tsv (gene quantifications); assembly: hg19; genome annotation: V19 | gene quantifications | hg19 | 9.1 MB | link | |
| ENCFF612EUU | ENCFF612EUU.tsv | tsv (gene quantifications); assembly: hg19; genome annotation: V19 | gene quantifications | hg19 | 9.1 MB | link | |
| ENCFF382BQF | ENCFF382BQF.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 | transcript quantifications | GRCh38 | 25.4 MB | link | |
| ENCFF982QRQ | ENCFF982QRQ.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 | transcript quantifications | GRCh38 | 25.3 MB | link | |
| ENCFF147DBW | ENCFF147DBW.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 27.4 MB | link | |
| ENCFF471XJX | ENCFF471XJX.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 29.8 MB | link | |
| ENCFF473JQC | ENCFF473JQC.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 29.8 MB | link | |
| ENCFF878TEY | ENCFF878TEY.tsv | tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 | transcript quantifications | GRCh38 | 27.4 MB | link | |
| ENCFF168FPZ | ENCFF168FPZ.tsv | tsv (transcript quantifications); assembly: hg19; genome annotation: V19 | transcript quantifications | hg19 | 24.9 MB | link | |
| ENCFF619LZT | ENCFF619LZT.tsv | tsv (transcript quantifications); assembly: hg19; genome annotation: V19 | transcript quantifications | hg19 | 24.9 MB | link |