ENCSR239BCO
ENCSR ENCODEshRNA knockdown against PTBP1 in K562 cells followed by RNA-seq
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of PTBP1 in Homo sapiens K562 expressing RNAi targeting H. sapiens PTBP1
Overall Design
shRNA knockdown against PTBP1 in K562 cells followed by RNA-seq
Analysis
View Data Processing
Analysis page is available for ENCSR239BCO.
Dataset Citations (2)
ENCODE Metadata
Total file size: 100.0 GBAssay: shRNA RNA-seq
Target: PTBP1
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens PTBP1
Files: 84
Unique ENC file IDs: 84
File Formats
bigWig (48)
bam (18)
tsv (14)
fastq (4)
Output types (9)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
reads (4)
Data Files (84)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF001ZGC | ENCFF001ZGC.bam | bam (alignments) | alignments | 4.2 GB | link | ||
| ENCFF001ZGE | ENCFF001ZGE.bam | bam (alignments) | alignments | 4.4 GB | link | ||
| ENCFF071RFP | ENCFF071RFP.bam | bam (alignments) | alignments | 5.6 GB | link | ||
| ENCFF103RQT | ENCFF103RQT.bam | bam (alignments) | alignments | 5.8 GB | link | ||
| ENCFF217PVY | ENCFF217PVY.bam | bam (alignments) | alignments | 4.8 GB | link | ||
| ENCFF400STF | ENCFF400STF.bam | bam (alignments) | alignments | 5.1 GB | link | ||
| ENCFF481YPH | ENCFF481YPH.bam | bam (alignments) | alignments | 4.4 GB | link | ||
| ENCFF505OUF | ENCFF505OUF.bam | bam (alignments) | alignments | 5.6 GB | link | ||
| ENCFF575GHP | ENCFF575GHP.bam | bam (alignments) | alignments | 5.0 GB | link | ||
| ENCFF731QDL | ENCFF731QDL.bam | bam (alignments) | alignments | 5.8 GB | link | ||
| ENCFF898JEY | ENCFF898JEY.bam | bam (alignments) | alignments | 4.3 GB | link | ||
| ENCFF964HQC | ENCFF964HQC.bam | bam (alignments) | alignments | 4.7 GB | link | ||
| ENCFF007MKX | ENCFF007MKX.bam | bam (transcriptome alignments) | transcriptome alignments | 4.4 GB | link | ||
| ENCFF101PPN | ENCFF101PPN.bam | bam (transcriptome alignments) | transcriptome alignments | 3.9 GB | link | ||
| ENCFF254IDD | ENCFF254IDD.bam | bam (transcriptome alignments) | transcriptome alignments | 3.9 GB | link | ||
| ENCFF427HNS | ENCFF427HNS.bam | bam (transcriptome alignments) | transcriptome alignments | 4.3 GB | link | ||
| ENCFF568OPY | ENCFF568OPY.bam | bam (transcriptome alignments) | transcriptome alignments | 3.8 GB | link | ||
| ENCFF628RBQ | ENCFF628RBQ.bam | bam (transcriptome alignments) | transcriptome alignments | 3.8 GB | link | ||
| ENCFF001ZFS | ENCFF001ZFS.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 105.2 MB | link | ||
| ENCFF001ZFT | ENCFF001ZFT.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 115.0 MB | link | ||
| ENCFF145RHT | ENCFF145RHT.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 124.3 MB | link | ||
| ENCFF223INM | ENCFF223INM.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 142.4 MB | link | ||
| ENCFF270RJQ | ENCFF270RJQ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 129.2 MB | link | ||
| ENCFF405YYZ | ENCFF405YYZ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 116.9 MB | link | ||
| ENCFF480ILY | ENCFF480ILY.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 142.5 MB | link | ||
| ENCFF516TXR | ENCFF516TXR.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 117.8 MB | link | ||
| ENCFF678CJD | ENCFF678CJD.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 130.0 MB | link | ||
| ENCFF785GLF | ENCFF785GLF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 132.7 MB | link | ||
| ENCFF903CSW | ENCFF903CSW.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 139.6 MB | link | ||
| ENCFF941LPF | ENCFF941LPF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 132.7 MB | link | ||
| ENCFF001ZFK | ENCFF001ZFK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 97.1 MB | link | ||
| ENCFF001ZFL | ENCFF001ZFL.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 104.1 MB | link | ||
| ENCFF026VMF | ENCFF026VMF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 118.1 MB | link | ||
| ENCFF127TLE | ENCFF127TLE.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 107.5 MB | link | ||
| ENCFF143JMB | ENCFF143JMB.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 126.9 MB | link | ||
| ENCFF334LDG | ENCFF334LDG.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 115.6 MB | link | ||
| ENCFF372QKJ | ENCFF372QKJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 115.9 MB | link | ||
| ENCFF433ISO | ENCFF433ISO.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 116.7 MB | link | ||
| ENCFF585PAA | ENCFF585PAA.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 126.9 MB | link | ||
| ENCFF678UPJ | ENCFF678UPJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 126.8 MB | link | ||
| ENCFF730MSD | ENCFF730MSD.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 118.8 MB | link | ||
| ENCFF922FUI | ENCFF922FUI.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 107.0 MB | link | ||
| ENCFF001ZFW | ENCFF001ZFW.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 105.3 MB | link | ||
| ENCFF001ZFX | ENCFF001ZFX.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 115.6 MB | link | ||
| ENCFF067WCH | ENCFF067WCH.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 134.0 MB | link | ||
| ENCFF214YPF | ENCFF214YPF.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 126.9 MB | link | ||
| ENCFF381JLE | ENCFF381JLE.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 118.4 MB | link | ||
| ENCFF520RLD | ENCFF520RLD.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 144.0 MB | link | ||
| ENCFF666AIO | ENCFF666AIO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 140.5 MB | link | ||
| ENCFF729KVA | ENCFF729KVA.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 134.0 MB | link | ||
| ENCFF849XFY | ENCFF849XFY.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 118.0 MB | link | ||
| ENCFF974JUL | ENCFF974JUL.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 128.3 MB | link | ||
| ENCFF977LSB | ENCFF977LSB.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 130.8 MB | link | ||
| ENCFF985MYR | ENCFF985MYR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 144.0 MB | link | ||
| ENCFF001ZFO | ENCFF001ZFO.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 98.2 MB | link | ||
| ENCFF001ZFP | ENCFF001ZFP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 105.7 MB | link | ||
| ENCFF016USP | ENCFF016USP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 129.4 MB | link | ||
| ENCFF024TCK | ENCFF024TCK.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 117.5 MB | link | ||
| ENCFF378ZRH | ENCFF378ZRH.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 119.0 MB | link | ||
| ENCFF396UTT | ENCFF396UTT.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 117.8 MB | link | ||
| ENCFF448WYB | ENCFF448WYB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 119.0 MB | link | ||
| ENCFF470VIG | ENCFF470VIG.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 129.4 MB | link | ||
| ENCFF550LOP | ENCFF550LOP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 108.8 MB | link | ||
| ENCFF845JAB | ENCFF845JAB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 109.2 MB | link | ||
| ENCFF907UPH | ENCFF907UPH.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 129.3 MB | link | ||
| ENCFF974CDL | ENCFF974CDL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 117.9 MB | link | ||
| ENCFF001ZGD | ENCFF001ZGD.fastq | fastq (reads) | reads | 2.5 GB | link | ||
| ENCFF001ZGF | ENCFF001ZGF.fastq | fastq (reads) | reads | 2.6 GB | link | ||
| ENCFF001ZGI | ENCFF001ZGI.fastq | fastq (reads) | reads | 2.5 GB | link | ||
| ENCFF001ZGJ | ENCFF001ZGJ.fastq | fastq (reads) | reads | 2.6 GB | link | ||
| ENCFF157USJ | ENCFF157USJ.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF313ODV | ENCFF313ODV.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF544GFI | ENCFF544GFI.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF549KCO | ENCFF549KCO.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF826JBR | ENCFF826JBR.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF881SGE | ENCFF881SGE.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF095YUD | ENCFF095YUD.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF116BQO | ENCFF116BQO.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF225EOH | ENCFF225EOH.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF246JWU | ENCFF246JWU.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF367VKA | ENCFF367VKA.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF472MQL | ENCFF472MQL.tsv | tsv (transcript quantifications) | transcript quantifications | 25.4 MB | link | ||
| ENCFF558BHM | ENCFF558BHM.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF938RJA | ENCFF938RJA.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link |