ENCSR912EHP
ENCSR ENCODEshRNA knockdown against PES1 in HepG2 cells followed by RNA-seq. (PES1_BGHLV17)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of PES1 in Homo sapiens HepG2 expressing RNAi targeting H. sapiens PES1
Overall Design
shRNA knockdown against PES1 in HepG2 cells followed by RNA-seq. (PES1_BGHLV17)
Analysis
View Data Processing
Analysis page is available for ENCSR912EHP.
Dataset Citations (2)
ENCODE Metadata
Total file size: 104.0 GBAssay: shRNA RNA-seq
Target: PES1
Biosample: Homo sapiens HepG2 expressing RNAi targeting H. sapiens PES1
Files: 66
Unique ENC file IDs: 66
File Formats
bigWig (40)
bam (14)
tsv (8)
fastq (4)
Output types (9)
alignments (10)
minus strand signal of all reads (10)
minus strand signal of unique reads (10)
plus strand signal of all reads (10)
plus strand signal of unique reads (10)
gene quantifications (4)
reads (4)
transcript quantifications (4)
transcriptome alignments (4)
Data Files (66)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF056HAR | ENCFF056HAR.bam | bam (alignments) | alignments | 2.6 GB | link | ||
| ENCFF220VZW | ENCFF220VZW.bam | bam (alignments) | alignments | 9.2 GB | link | ||
| ENCFF330RJZ | ENCFF330RJZ.bam | bam (alignments) | alignments | 3.0 GB | link | ||
| ENCFF336GPA | ENCFF336GPA.bam | bam (alignments) | alignments | 2.6 GB | link | ||
| ENCFF374PNQ | ENCFF374PNQ.bam | bam (alignments) | alignments | 7.9 GB | link | ||
| ENCFF465EHW | ENCFF465EHW.bam | bam (alignments) | alignments | 3.1 GB | link | ||
| ENCFF477UCD | ENCFF477UCD.bam | bam (alignments) | alignments | 8.0 GB | link | ||
| ENCFF717UBJ | ENCFF717UBJ.bam | bam (alignments) | alignments | 9.6 GB | link | ||
| ENCFF741RJD | ENCFF741RJD.bam | bam (alignments) | alignments | 7.9 GB | link | ||
| ENCFF959LXB | ENCFF959LXB.bam | bam (alignments) | alignments | 2.6 GB | link | ||
| ENCFF257ZIT | ENCFF257ZIT.bam | bam (transcriptome alignments) | transcriptome alignments | 11.6 GB | link | ||
| ENCFF477MGT | ENCFF477MGT.bam | bam (transcriptome alignments) | transcriptome alignments | 11.5 GB | link | ||
| ENCFF486DBZ | ENCFF486DBZ.bam | bam (transcriptome alignments) | transcriptome alignments | 3.7 GB | link | ||
| ENCFF535VXB | ENCFF535VXB.bam | bam (transcriptome alignments) | transcriptome alignments | 3.7 GB | link | ||
| ENCFF097KAF | ENCFF097KAF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 57.9 MB | link | ||
| ENCFF213OTQ | ENCFF213OTQ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 120.4 MB | link | ||
| ENCFF516AFO | ENCFF516AFO.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 121.3 MB | link | ||
| ENCFF531LFY | ENCFF531LFY.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 107.7 MB | link | ||
| ENCFF534VJX | ENCFF534VJX.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 109.7 MB | link | ||
| ENCFF597NGX | ENCFF597NGX.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 63.3 MB | link | ||
| ENCFF655KEE | ENCFF655KEE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 107.9 MB | link | ||
| ENCFF758DYJ | ENCFF758DYJ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 63.8 MB | link | ||
| ENCFF842TTG | ENCFF842TTG.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 57.2 MB | link | ||
| ENCFF885ZNO | ENCFF885ZNO.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 55.2 MB | link | ||
| ENCFF088EMB | ENCFF088EMB.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 102.2 MB | link | ||
| ENCFF332YFZ | ENCFF332YFZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 56.7 MB | link | ||
| ENCFF394MDG | ENCFF394MDG.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 57.5 MB | link | ||
| ENCFF468CWT | ENCFF468CWT.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 54.1 MB | link | ||
| ENCFF486CGG | ENCFF486CGG.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 101.2 MB | link | ||
| ENCFF504GCC | ENCFF504GCC.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 109.3 MB | link | ||
| ENCFF649QMY | ENCFF649QMY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 53.3 MB | link | ||
| ENCFF760AJK | ENCFF760AJK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 109.3 MB | link | ||
| ENCFF784RRG | ENCFF784RRG.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 102.9 MB | link | ||
| ENCFF896CTZ | ENCFF896CTZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 51.4 MB | link | ||
| ENCFF203QUG | ENCFF203QUG.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 64.2 MB | link | ||
| ENCFF220GVO | ENCFF220GVO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 58.1 MB | link | ||
| ENCFF245SGO | ENCFF245SGO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 56.3 MB | link | ||
| ENCFF327ABJ | ENCFF327ABJ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 122.4 MB | link | ||
| ENCFF525AIP | ENCFF525AIP.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 110.0 MB | link | ||
| ENCFF634LRE | ENCFF634LRE.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 64.9 MB | link | ||
| ENCFF747MJF | ENCFF747MJF.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 59.0 MB | link | ||
| ENCFF751UQR | ENCFF751UQR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 110.0 MB | link | ||
| ENCFF954XXC | ENCFF954XXC.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 123.5 MB | link | ||
| ENCFF996SVO | ENCFF996SVO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 112.0 MB | link | ||
| ENCFF046FFS | ENCFF046FFS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 112.2 MB | link | ||
| ENCFF123DHV | ENCFF123DHV.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 104.8 MB | link | ||
| ENCFF208CSP | ENCFF208CSP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 55.5 MB | link | ||
| ENCFF646BTE | ENCFF646BTE.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 58.9 MB | link | ||
| ENCFF649EDK | ENCFF649EDK.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 104.2 MB | link | ||
| ENCFF687IMM | ENCFF687IMM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 112.3 MB | link | ||
| ENCFF758ZLE | ENCFF758ZLE.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 105.8 MB | link | ||
| ENCFF764AFL | ENCFF764AFL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 58.0 MB | link | ||
| ENCFF816JWF | ENCFF816JWF.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 54.4 MB | link | ||
| ENCFF897IZD | ENCFF897IZD.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 52.7 MB | link | ||
| ENCFF238XPS | ENCFF238XPS.fastq | fastq (reads) | reads | 5.2 GB | link | ||
| ENCFF395SKV | ENCFF395SKV.fastq | fastq (reads) | reads | 5.0 GB | link | ||
| ENCFF601BGW | ENCFF601BGW.fastq | fastq (reads) | reads | 1.7 GB | link | ||
| ENCFF963IOX | ENCFF963IOX.fastq | fastq (reads) | reads | 1.6 GB | link | ||
| ENCFF191SAO | ENCFF191SAO.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF281JBZ | ENCFF281JBZ.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF304DWT | ENCFF304DWT.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF691ZUI | ENCFF691ZUI.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF026BEI | ENCFF026BEI.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF285IYO | ENCFF285IYO.tsv | tsv (transcript quantifications) | transcript quantifications | 25.2 MB | link | ||
| ENCFF445PHL | ENCFF445PHL.tsv | tsv (transcript quantifications) | transcript quantifications | 24.8 MB | link | ||
| ENCFF739UGL | ENCFF739UGL.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link |