ENCSR231RKU
ENCSR ENCODERNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX21. (DDX21_BGHcLV03)
Organism:
Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
CRISPR RNA-seq of DDX21 in Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DDX21
Overall Design
RNA-seq on HepG2 cells treated with a CRISPR gRNA against DDX21. (DDX21_BGHcLV03)
Analysis
View Data Processing
Analysis page is available for ENCSR231RKU.
ENCODE Metadata
Total file size: 86.9 GBAssay: CRISPR RNA-seq
Target: DDX21
Biosample: Homo sapiens HepG2 genetically modified (deletion) using CRISPR targeting H. sapiens DDX21
Files: 84
Unique ENC file IDs: 84
File Formats
bigWig (48)
bam (18)
tsv (14)
fastq (4)
Output types (9)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
reads (4)
Data Files (84)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF162RTQ | ENCFF162RTQ.bam | bam (alignments) | alignments | 3.8 GB | link | ||
| ENCFF230EYP | ENCFF230EYP.bam | bam (alignments) | alignments | 3.2 GB | link | ||
| ENCFF279CFC | ENCFF279CFC.bam | bam (alignments) | alignments | 3.2 GB | link | ||
| ENCFF289RWR | ENCFF289RWR.bam | bam (alignments) | alignments | 4.0 GB | link | ||
| ENCFF389BIB | ENCFF389BIB.bam | bam (alignments) | alignments | 3.9 GB | link | ||
| ENCFF391REN | ENCFF391REN.bam | bam (alignments) | alignments | 3.9 GB | link | ||
| ENCFF475KZX | ENCFF475KZX.bam | bam (alignments) | alignments | 3.1 GB | link | ||
| ENCFF481ZBC | ENCFF481ZBC.bam | bam (alignments) | alignments | 3.2 GB | link | ||
| ENCFF560TKI | ENCFF560TKI.bam | bam (alignments) | alignments | 4.0 GB | link | ||
| ENCFF794OYR | ENCFF794OYR.bam | bam (alignments) | alignments | 3.3 GB | link | ||
| ENCFF840HTG | ENCFF840HTG.bam | bam (alignments) | alignments | 3.1 GB | link | ||
| ENCFF894AOE | ENCFF894AOE.bam | bam (alignments) | alignments | 3.9 GB | link | ||
| ENCFF009EPR | ENCFF009EPR.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF208AUB | ENCFF208AUB.bam | bam (transcriptome alignments) | transcriptome alignments | 4.9 GB | link | ||
| ENCFF345RWM | ENCFF345RWM.bam | bam (transcriptome alignments) | transcriptome alignments | 5.9 GB | link | ||
| ENCFF498CPK | ENCFF498CPK.bam | bam (transcriptome alignments) | transcriptome alignments | 4.9 GB | link | ||
| ENCFF548NGC | ENCFF548NGC.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF877TIP | ENCFF877TIP.bam | bam (transcriptome alignments) | transcriptome alignments | 5.6 GB | link | ||
| ENCFF076BPC | ENCFF076BPC.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 81.4 MB | link | ||
| ENCFF332AIL | ENCFF332AIL.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 86.3 MB | link | ||
| ENCFF334USU | ENCFF334USU.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 74.8 MB | link | ||
| ENCFF423CAI | ENCFF423CAI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 82.0 MB | link | ||
| ENCFF440QNA | ENCFF440QNA.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 87.0 MB | link | ||
| ENCFF455TFU | ENCFF455TFU.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 74.1 MB | link | ||
| ENCFF659ROW | ENCFF659ROW.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 78.2 MB | link | ||
| ENCFF759IUE | ENCFF759IUE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 77.0 MB | link | ||
| ENCFF781IWN | ENCFF781IWN.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 82.0 MB | link | ||
| ENCFF870OOI | ENCFF870OOI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 75.5 MB | link | ||
| ENCFF952SYE | ENCFF952SYE.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 87.0 MB | link | ||
| ENCFF998JZL | ENCFF998JZL.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 71.4 MB | link | ||
| ENCFF202MMR | ENCFF202MMR.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 72.9 MB | link | ||
| ENCFF414HKM | ENCFF414HKM.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 76.7 MB | link | ||
| ENCFF423HIM | ENCFF423HIM.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 76.8 MB | link | ||
| ENCFF508JDU | ENCFF508JDU.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 77.2 MB | link | ||
| ENCFF530TYZ | ENCFF530TYZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 73.4 MB | link | ||
| ENCFF533NCF | ENCFF533NCF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 66.1 MB | link | ||
| ENCFF587TTX | ENCFF587TTX.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 73.4 MB | link | ||
| ENCFF618TLI | ENCFF618TLI.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 73.8 MB | link | ||
| ENCFF747EVT | ENCFF747EVT.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 73.8 MB | link | ||
| ENCFF791OND | ENCFF791OND.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 68.8 MB | link | ||
| ENCFF893UYT | ENCFF893UYT.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 69.4 MB | link | ||
| ENCFF991IFD | ENCFF991IFD.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 69.3 MB | link | ||
| ENCFF037CTG | ENCFF037CTG.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 75.2 MB | link | ||
| ENCFF170ASK | ENCFF170ASK.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 79.6 MB | link | ||
| ENCFF424YJH | ENCFF424YJH.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 72.5 MB | link | ||
| ENCFF549WLN | ENCFF549WLN.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 78.3 MB | link | ||
| ENCFF555WJV | ENCFF555WJV.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 88.4 MB | link | ||
| ENCFF560WTL | ENCFF560WTL.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 83.2 MB | link | ||
| ENCFF752RCA | ENCFF752RCA.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 82.4 MB | link | ||
| ENCFF803AOS | ENCFF803AOS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 87.5 MB | link | ||
| ENCFF847XCP | ENCFF847XCP.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 76.1 MB | link | ||
| ENCFF909ZDR | ENCFF909ZDR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 76.9 MB | link | ||
| ENCFF979CUH | ENCFF979CUH.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 83.1 MB | link | ||
| ENCFF999LCT | ENCFF999LCT.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 88.4 MB | link | ||
| ENCFF029KYM | ENCFF029KYM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 70.9 MB | link | ||
| ENCFF122MNA | ENCFF122MNA.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 67.7 MB | link | ||
| ENCFF156TRC | ENCFF156TRC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 78.7 MB | link | ||
| ENCFF297KKN | ENCFF297KKN.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 75.6 MB | link | ||
| ENCFF414WFG | ENCFF414WFG.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 70.6 MB | link | ||
| ENCFF485LAT | ENCFF485LAT.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 75.3 MB | link | ||
| ENCFF574WAS | ENCFF574WAS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 71.1 MB | link | ||
| ENCFF694XDC | ENCFF694XDC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 79.2 MB | link | ||
| ENCFF789SLZ | ENCFF789SLZ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 75.2 MB | link | ||
| ENCFF937WGM | ENCFF937WGM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 74.6 MB | link | ||
| ENCFF951MJL | ENCFF951MJL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 75.6 MB | link | ||
| ENCFF986OVS | ENCFF986OVS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 78.6 MB | link | ||
| ENCFF013ZBD | ENCFF013ZBD.fastq | fastq (reads) | reads | 2.2 GB | link | ||
| ENCFF144CLP | ENCFF144CLP.fastq | fastq (reads) | reads | 2.3 GB | link | ||
| ENCFF706QKU | ENCFF706QKU.fastq | fastq (reads) | reads | 2.2 GB | link | ||
| ENCFF741IAM | ENCFF741IAM.fastq | fastq (reads) | reads | 2.1 GB | link | ||
| ENCFF196XAJ | ENCFF196XAJ.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF248WOC | ENCFF248WOC.tsv | tsv (gene quantifications) | gene quantifications | 9.5 MB | link | ||
| ENCFF249RVG | ENCFF249RVG.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF519WVX | ENCFF519WVX.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF605LWO | ENCFF605LWO.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF927SCE | ENCFF927SCE.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF057KYV | ENCFF057KYV.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF092REU | ENCFF092REU.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF409TMV | ENCFF409TMV.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF430FNK | ENCFF430FNK.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF673NAE | ENCFF673NAE.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF834NBL | ENCFF834NBL.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF836JDW | ENCFF836JDW.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF914EZR | ENCFF914EZR.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link |