ENCSR395HQT
ENCSR ENCODEControl CRISPR gRNA against no target in K562 cells followed by RNA-seq on day 30. (NT-D30_BGKcLV02)
Organism:
Homo sapiens
Experiment Types:
CRISPR RNA-seq
Status:
released
Contact:
Brenton Graveley, UConn
Summary
CRISPR RNA-seq of in Homo sapiens K562 genetically modified (deletion) using CRISPR
Overall Design
Control CRISPR gRNA against no target in K562 cells followed by RNA-seq on day 30. (NT-D30_BGKcLV02)
Analysis
View Data Processing
Analysis page is available for ENCSR395HQT.
ENCODE Metadata
Total file size: 75.7 GBAssay: CRISPR RNA-seq
Biosample: Homo sapiens K562 genetically modified (deletion) using CRISPR
Files: 84
Unique ENC file IDs: 84
File Formats
bigWig (48)
bam (18)
tsv (14)
fastq (4)
Output types (9)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
reads (4)
Data Files (84)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF004IQL | ENCFF004IQL.bam | bam (alignments) | alignments | 2.8 GB | link | ||
| ENCFF067NZJ | ENCFF067NZJ.bam | bam (alignments) | alignments | 2.7 GB | link | ||
| ENCFF099ACO | ENCFF099ACO.bam | bam (alignments) | alignments | 3.4 GB | link | ||
| ENCFF158SSL | ENCFF158SSL.bam | bam (alignments) | alignments | 2.9 GB | link | ||
| ENCFF169ROB | ENCFF169ROB.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF189QEC | ENCFF189QEC.bam | bam (alignments) | alignments | 3.7 GB | link | ||
| ENCFF368ZLJ | ENCFF368ZLJ.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF614LCO | ENCFF614LCO.bam | bam (alignments) | alignments | 2.7 GB | link | ||
| ENCFF624FMN | ENCFF624FMN.bam | bam (alignments) | alignments | 3.7 GB | link | ||
| ENCFF655HCV | ENCFF655HCV.bam | bam (alignments) | alignments | 2.8 GB | link | ||
| ENCFF669POK | ENCFF669POK.bam | bam (alignments) | alignments | 2.8 GB | link | ||
| ENCFF737CUY | ENCFF737CUY.bam | bam (alignments) | alignments | 3.5 GB | link | ||
| ENCFF091VFG | ENCFF091VFG.bam | bam (transcriptome alignments) | transcriptome alignments | 4.7 GB | link | ||
| ENCFF146VHX | ENCFF146VHX.bam | bam (transcriptome alignments) | transcriptome alignments | 3.9 GB | link | ||
| ENCFF422UQZ | ENCFF422UQZ.bam | bam (transcriptome alignments) | transcriptome alignments | 3.9 GB | link | ||
| ENCFF572MNU | ENCFF572MNU.bam | bam (transcriptome alignments) | transcriptome alignments | 4.5 GB | link | ||
| ENCFF663CJD | ENCFF663CJD.bam | bam (transcriptome alignments) | transcriptome alignments | 4.1 GB | link | ||
| ENCFF851EVG | ENCFF851EVG.bam | bam (transcriptome alignments) | transcriptome alignments | 4.1 GB | link | ||
| ENCFF032ELQ | ENCFF032ELQ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 100.3 MB | link | ||
| ENCFF082UPM | ENCFF082UPM.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 86.0 MB | link | ||
| ENCFF177KAV | ENCFF177KAV.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 100.2 MB | link | ||
| ENCFF221LPV | ENCFF221LPV.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 85.2 MB | link | ||
| ENCFF233MFZ | ENCFF233MFZ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 91.9 MB | link | ||
| ENCFF488HWW | ENCFF488HWW.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 98.3 MB | link | ||
| ENCFF572HTD | ENCFF572HTD.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 91.3 MB | link | ||
| ENCFF632CFV | ENCFF632CFV.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 100.3 MB | link | ||
| ENCFF652RMI | ENCFF652RMI.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 98.9 MB | link | ||
| ENCFF773CHM | ENCFF773CHM.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 100.2 MB | link | ||
| ENCFF828RGN | ENCFF828RGN.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 89.5 MB | link | ||
| ENCFF959YAK | ENCFF959YAK.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 89.1 MB | link | ||
| ENCFF062VIV | ENCFF062VIV.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 82.9 MB | link | ||
| ENCFF098ZWI | ENCFF098ZWI.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 78.1 MB | link | ||
| ENCFF121ZSC | ENCFF121ZSC.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 88.5 MB | link | ||
| ENCFF234CQY | ENCFF234CQY.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 83.1 MB | link | ||
| ENCFF476XTO | ENCFF476XTO.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 88.7 MB | link | ||
| ENCFF529LSD | ENCFF529LSD.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 88.5 MB | link | ||
| ENCFF549PJB | ENCFF549PJB.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 88.8 MB | link | ||
| ENCFF760JMT | ENCFF760JMT.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 78.4 MB | link | ||
| ENCFF788YMJ | ENCFF788YMJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 88.4 MB | link | ||
| ENCFF838YQF | ENCFF838YQF.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 82.5 MB | link | ||
| ENCFF974SEJ | ENCFF974SEJ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 88.1 MB | link | ||
| ENCFF999RFM | ENCFF999RFM.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 83.6 MB | link | ||
| ENCFF167HZR | ENCFF167HZR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 100.5 MB | link | ||
| ENCFF308HCS | ENCFF308HCS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 87.9 MB | link | ||
| ENCFF364DQU | ENCFF364DQU.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.4 MB | link | ||
| ENCFF378ZJS | ENCFF378ZJS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 100.3 MB | link | ||
| ENCFF413AKQ | ENCFF413AKQ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 91.2 MB | link | ||
| ENCFF441SJN | ENCFF441SJN.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.8 MB | link | ||
| ENCFF467ANR | ENCFF467ANR.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 101.8 MB | link | ||
| ENCFF485AGS | ENCFF485AGS.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 102.1 MB | link | ||
| ENCFF562PWD | ENCFF562PWD.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 102.1 MB | link | ||
| ENCFF739XYW | ENCFF739XYW.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 101.8 MB | link | ||
| ENCFF829GDJ | ENCFF829GDJ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 87.3 MB | link | ||
| ENCFF890MIO | ENCFF890MIO.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 90.6 MB | link | ||
| ENCFF012FEY | ENCFF012FEY.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 91.0 MB | link | ||
| ENCFF372MMH | ENCFF372MMH.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 85.6 MB | link | ||
| ENCFF405RNC | ENCFF405RNC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 84.6 MB | link | ||
| ENCFF437QUD | ENCFF437QUD.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 81.0 MB | link | ||
| ENCFF456AYD | ENCFF456AYD.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 91.3 MB | link | ||
| ENCFF595SQQ | ENCFF595SQQ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 90.9 MB | link | ||
| ENCFF734KCL | ENCFF734KCL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 90.4 MB | link | ||
| ENCFF802GNJ | ENCFF802GNJ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 86.3 MB | link | ||
| ENCFF857VLM | ENCFF857VLM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 85.2 MB | link | ||
| ENCFF875YOR | ENCFF875YOR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 80.8 MB | link | ||
| ENCFF912URC | ENCFF912URC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 91.2 MB | link | ||
| ENCFF977QXM | ENCFF977QXM.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 91.4 MB | link | ||
| ENCFF275CAO | ENCFF275CAO.fastq | fastq (reads) | reads | 2.0 GB | link | ||
| ENCFF423BGO | ENCFF423BGO.fastq | fastq (reads) | reads | 1.9 GB | link | ||
| ENCFF439JJL | ENCFF439JJL.fastq | fastq (reads) | reads | 1.9 GB | link | ||
| ENCFF665YCB | ENCFF665YCB.fastq | fastq (reads) | reads | 2.0 GB | link | ||
| ENCFF242CJO | ENCFF242CJO.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF298VMN | ENCFF298VMN.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF424YDF | ENCFF424YDF.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF467RZB | ENCFF467RZB.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF586IQJ | ENCFF586IQJ.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF949GXG | ENCFF949GXG.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF201KGU | ENCFF201KGU.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF276RBH | ENCFF276RBH.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF349BDF | ENCFF349BDF.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF423PPR | ENCFF423PPR.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF451JGK | ENCFF451JGK.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF452PSC | ENCFF452PSC.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF644RMS | ENCFF644RMS.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF739MBT | ENCFF739MBT.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link |