← All datasets

GSE315443

GSE GEO
View on GEO Export SRA CSV

MBNL2 dysfunction in outer radial glial cells is associated with disrupted corticogenesis in congenital myotonic dystrophy [scRNA-Seq]

Platform: GPL24676
Samples: 3

Relations

GSE317529

Summary

The loss of Muscleblind-like (MBNL) protein function, resulting from its sequestration by toxic CUG-expanded DMPK transcripts, is a central pathological mechanism in myotonic dystrophy type 1 (DM1). However, the role of MBNL in neurodevelopmental disorders associated with severe forms of DM1 remains poorly understood. We performed single-cell RNA sequencing using the 10x Genomics Chromium platform to investigate the cellular composition and transcriptomic alterations in forebrain organoids derived from an unaffected individual, a patient with congenital myotonic dystrophy (CDM) carrying approximately 2,000 CTG repeats or an isogenic control in which the pathogenic repeat expansion was removed. Our analysis revealed that MBNL2, known to play a key role in the pathogenesis of myotonic dystrophy, is expressed in a subset of neural stem cells in mature forebrain organoids. We identified altered expression of genes involved in neuronal migration and axonal projection specifically in upper-layer cortical neurons of CDM organoids when compared with both the isogenic and the unaffected control. These findings suggest a role for MBNL2 during prenatal cortical development and highlight impaired differentiation of late-born neurons as a potential contributor to the neurodevelopmental abnormalities associated with CDM.

Overall Design

Forebrain organoids were differentiated from induced pluripotent stem cells (iPSCs) derived either from pediatric patients with CDM carrying approximately 2,000 CTG repeats in the DMPK gene or from an age-matched unaffected individual. Isogenic control lines were also generated by removing the CTG repeat expansion from the DMPK locus in CDM iPSCs. After 80 days of culture following embryoid body formation, 6–12 organoids per condition were dissociated, and an average of 3460 cells per sample were loaded onto the 10x Genomics Chromium platform to generate single-cell transcriptomic data.

Analysis page is available for GSE315443.

Supplementary Files (1)

GSE315443_RAW.tar Download
GEO Samples (3)

SRA Experiments (3) and Runs (3)

Total: 27207 MB
SRX31669797 SRP659351 RNA-Seq PAIRED
Sample: SRS27642275
BioProject: PRJNA1397161
BioSample: SAMN54413845
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR36658829 125217985 25294032970 9048.0 SRA
SRX31669798 SRP659351 RNA-Seq PAIRED
Sample: SRS27642276
BioProject: PRJNA1397161
BioSample: SAMN54413844
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR36658828 129866195 26232971390 9384.0 SRA
SRX31669799 SRP659351 RNA-Seq PAIRED
Sample: SRS27642277
BioProject: PRJNA1397161
BioSample: SAMN54413843
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR36658827 121746126 24592717452 8775.0 SRA

Linked Publications (1)

Data Files (3)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR36658827_GSM9428630 RNA-Seq 8.6 GB link
— SRR36658828_GSM9428629 RNA-Seq 9.2 GB link
— SRR36658829_GSM9428628 RNA-Seq 8.8 GB link