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GSE290755

GSE GEO Potentially related
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Modulation of the DNA/RNA Binding Protein ARID5A Regulates Microglial Activation and Response [rna-seq]

Organism: Homo sapiens
Platform: Illumina
Status: manual

Summary

RNA binding proteins (RBPs) shape cellular function in health and disease. However, the function of RBPs expressed specifically in the central nervous system (CNS) remain uncharacterized. Within the CNS, we identify ARID5A as a microglial-specific RBP and integrate multi-omics analyses of ARID5A's RNA, DNA, and protein interactions to uncover its RNA-mediated regulation of microglial functions. We show ARID5A regulates the splicing and translation of its RNA targets, many of which are integral to microglial functions. We find ARID5A modulates cytokine secretion, lysosome activity, and iron accumulation, as well as ferroptosis sensitivity in microglia and co-cultured neurons. We illustrate the neuroprotective potential of ARID5A modulation, in which knockdown restored dysregulated functions in TREM2 mutant microglia. Our results highlight the potential of leveraging ARID5A-RNA interactions to restore dysregulated pathways in neurodegeneration.

Analysis page is available for GSE290755.
GEO Samples (9)

SRA Experiments (9) and Runs (9)

Total: 24061 MB
SRX27849857 SRP567202 RNA-Seq PAIRED
Sample: SRS24223545
BioProject: PRJNA1230069
BioSample: SAMN47176526
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538813 27091915 8181758330 2785.0 SRA
SRX27849858 SRP567202 RNA-Seq PAIRED
Sample: SRS24223546
BioProject: PRJNA1230069
BioSample: SAMN47176525
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538812 33824829 10215098358 3489.0 SRA
SRX27849859 SRP567202 RNA-Seq PAIRED
Sample: SRS24223547
BioProject: PRJNA1230069
BioSample: SAMN47176524
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538811 20939411 6323702122 2171.0 SRA
SRX27849860 SRP567202 RNA-Seq PAIRED
Sample: SRS24223548
BioProject: PRJNA1230069
BioSample: SAMN47176523
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538810 37433120 11304802240 3761.0 SRA
SRX27849861 SRP567202 RNA-Seq PAIRED
Sample: SRS24223549
BioProject: PRJNA1230069
BioSample: SAMN47176522
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538809 25023840 7557199680 2559.0 SRA
SRX27849862 SRP567202 RNA-Seq PAIRED
Sample: SRS24223550
BioProject: PRJNA1230069
BioSample: SAMN47176521
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538808 35131931 7096650062 2275.0 SRA
SRX27849863 SRP567202 RNA-Seq PAIRED
Sample: SRS24223551
BioProject: PRJNA1230069
BioSample: SAMN47176520
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538807 35267133 7123960866 2284.0 SRA
SRX27849864 SRP567202 RNA-Seq PAIRED
Sample: SRS24223552
BioProject: PRJNA1230069
BioSample: SAMN47176519
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538806 35329163 7136490926 2281.0 SRA
SRX27849865 SRP567202 RNA-Seq PAIRED
Sample: SRS24223553
BioProject: PRJNA1230069
BioSample: SAMN47176518
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32538805 38147941 7705884082 2456.0 SRA

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Data Files (9)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR32538805_GSM8821218 RNA-Seq 2.4 GB link
— SRR32538806_GSM8821217 RNA-Seq 2.2 GB link
— SRR32538807_GSM8821216 RNA-Seq 2.2 GB link
— SRR32538808_GSM8821215 RNA-Seq 2.2 GB link
— SRR32538809_GSM8821214 RNA-Seq 2.5 GB link
— SRR32538810_GSM8821213 RNA-Seq 3.7 GB link
— SRR32538811_GSM8821212 RNA-Seq 2.1 GB link
— SRR32538812_GSM8821211 RNA-Seq 3.4 GB link
— SRR32538813_GSM8821210 RNA-Seq 2.7 GB link