GSE290755
GSE GEO Potentially relatedModulation of the DNA/RNA Binding Protein ARID5A Regulates Microglial Activation and Response [rna-seq]
Summary
RNA binding proteins (RBPs) shape cellular function in health and disease. However, the function of RBPs expressed specifically in the central nervous system (CNS) remain uncharacterized. Within the CNS, we identify ARID5A as a microglial-specific RBP and integrate multi-omics analyses of ARID5A's RNA, DNA, and protein interactions to uncover its RNA-mediated regulation of microglial functions. We show ARID5A regulates the splicing and translation of its RNA targets, many of which are integral to microglial functions. We find ARID5A modulates cytokine secretion, lysosome activity, and iron accumulation, as well as ferroptosis sensitivity in microglia and co-cultured neurons. We illustrate the neuroprotective potential of ARID5A modulation, in which knockdown restored dysregulated functions in TREM2 mutant microglia. Our results highlight the potential of leveraging ARID5A-RNA interactions to restore dysregulated pathways in neurodegeneration.
Analysis
View Data ProcessingGEO Samples (9)
SRA Experiments (9) and Runs (9)
Total: 24061 MBRuns (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538813 | 27091915 | 8181758330 | 2785.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538812 | 33824829 | 10215098358 | 3489.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538811 | 20939411 | 6323702122 | 2171.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538810 | 37433120 | 11304802240 | 3761.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538809 | 25023840 | 7557199680 | 2559.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538808 | 35131931 | 7096650062 | 2275.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538807 | 35267133 | 7123960866 | 2284.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538806 | 35329163 | 7136490926 | 2281.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR32538805 | 38147941 | 7705884082 | 2456.0 | SRA |
Potentially Related Publications (1)
This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.
Data Files (9)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| — | SRR32538805_GSM8821218 | RNA-Seq | 2.4 GB | link | |||
| — | SRR32538806_GSM8821217 | RNA-Seq | 2.2 GB | link | |||
| — | SRR32538807_GSM8821216 | RNA-Seq | 2.2 GB | link | |||
| — | SRR32538808_GSM8821215 | RNA-Seq | 2.2 GB | link | |||
| — | SRR32538809_GSM8821214 | RNA-Seq | 2.5 GB | link | |||
| — | SRR32538810_GSM8821213 | RNA-Seq | 3.7 GB | link | |||
| — | SRR32538811_GSM8821212 | RNA-Seq | 2.1 GB | link | |||
| — | SRR32538812_GSM8821211 | RNA-Seq | 3.4 GB | link | |||
| — | SRR32538813_GSM8821210 | RNA-Seq | 2.7 GB | link |