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GSE290765

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Modulation of the DNA/RNA Binding Protein ARID5A Regulates Microglial Activation and Response [cutnrun]

Organism: Homo sapiens
Platform: Illumina
Status: manual

Summary

RNA binding proteins (RBPs) shape cellular function in health and disease. However, the function of RBPs expressed specifically in the central nervous system (CNS) remain uncharacterized. Within the CNS, we identify ARID5A as a microglial-specific RBP and integrate multi-omics analyses of ARID5A's RNA, DNA, and protein interactions to uncover its RNA-mediated regulation of microglial functions. We show ARID5A regulates the splicing and translation of its RNA targets, many of which are integral to microglial functions. We find ARID5A modulates cytokine secretion, lysosome activity, and iron accumulation, as well as ferroptosis sensitivity in microglia and co-cultured neurons. We illustrate the neuroprotective potential of ARID5A modulation, in which knockdown restored dysregulated functions in TREM2 mutant microglia. Our results highlight the potential of leveraging ARID5A-RNA interactions to restore dysregulated pathways in neurodegeneration.

Analysis page is available for GSE290765.
GEO Samples (6)

SRA Experiments (6) and Runs (12)

Total: 2251 MB
SRX27836013 SRP567029 OTHER PAIRED
Sample: SRS24211202
BioProject: PRJNA1230081
BioSample: SAMN47146653
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR32524343 2827648 571184896 190.0 SRA
SRR32524344 3042093 614502786 203.0 SRA
SRX27836014 SRP567029 OTHER PAIRED
Sample: SRS24211203
BioProject: PRJNA1230081
BioSample: SAMN47146652
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR32524341 3175305 641411610 218.0 SRA
SRR32524342 3505464 708103728 239.0 SRA
SRX27836015 SRP567029 OTHER PAIRED
Sample: SRS24211204
BioProject: PRJNA1230081
BioSample: SAMN47146651
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR32524339 1630362 329333124 106.0 SRA
SRR32524340 1827671 369189542 118.0 SRA
SRX27836016 SRP567029 OTHER PAIRED
Sample: SRS24211205
BioProject: PRJNA1230081
BioSample: SAMN47146650
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR32524337 2058997 415917394 135.0 SRA
SRR32524338 2254949 455499698 147.0 SRA
SRX27836017 SRP567029 OTHER PAIRED
Sample: SRS24211206
BioProject: PRJNA1230081
BioSample: SAMN47146649
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR32524335 2883163 582398926 206.0 SRA
SRR32524336 3383337 683434074 242.0 SRA
SRX27836018 SRP567029 OTHER PAIRED
Sample: SRS24211207
BioProject: PRJNA1230081
BioSample: SAMN47146648
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR32524333 3039337 613946074 214.0 SRA
SRR32524334 3331208 672904016 233.0 SRA

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Data Files (12)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR32524333_GSM8821301 OTHER 214.0 MB link
— SRR32524334_GSM8821301 OTHER 233.0 MB link
— SRR32524335_GSM8821300 OTHER 206.0 MB link
— SRR32524336_GSM8821300 OTHER 242.0 MB link
— SRR32524337_GSM8821299 OTHER 135.0 MB link
— SRR32524338_GSM8821299 OTHER 147.0 MB link
— SRR32524339_GSM8821298 OTHER 106.0 MB link
— SRR32524340_GSM8821298 OTHER 118.0 MB link
— SRR32524341_GSM8821297 OTHER 218.0 MB link
— SRR32524342_GSM8821297 OTHER 239.0 MB link
— SRR32524343_GSM8821296 OTHER 190.0 MB link
— SRR32524344_GSM8821296 OTHER 203.0 MB link