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GSE290625

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Modulation of the DNA/RNA Binding Protein ARID5A Regulates Microglial Activation and Response [eclip]

Organism: Homo sapiens
Platform: Illumina
Status: manual

Summary

RNA binding proteins (RBPs) shape cellular function in health and disease. However, the function of RBPs expressed specifically in the central nervous system (CNS) remain uncharacterized. Within the CNS, we identify ARID5A as a microglial-specific RBP and integrate multi-omics analyses of ARID5A's RNA, DNA, and protein interactions to uncover its RNA-mediated regulation of microglial functions. We show ARID5A regulates the splicing and translation of its RNA targets, many of which are integral to microglial functions. We find ARID5A modulates cytokine secretion, lysosome activity, and iron accumulation, as well as ferroptosis sensitivity in microglia and co-cultured neurons. We illustrate the neuroprotective potential of ARID5A modulation, in which knockdown restored dysregulated functions in TREM2 mutant microglia. Our results highlight the potential of leveraging ARID5A-RNA interactions to restore dysregulated pathways in neurodegeneration.

Analysis page is available for GSE290625.
GEO Samples (4)

SRA Experiments (4) and Runs (4)

Total: 1948 MB
SRX27822770 SRP566719 RIP-Seq SINGLE
Sample: SRS24198651
BioProject: PRJNA1229430
BioSample: SAMN47128442
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32510411 25575654 1304358354 417.0 SRA
SRX27822771 SRP566719 RIP-Seq SINGLE
Sample: SRS24198654
BioProject: PRJNA1229430
BioSample: SAMN47128441
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32510410 26972805 1375613055 439.0 SRA
SRX27822772 SRP566719 RIP-Seq SINGLE
Sample: SRS24198653
BioProject: PRJNA1229430
BioSample: SAMN47128440
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32510409 32963318 1681129218 532.0 SRA
SRX27822773 SRP566719 RIP-Seq SINGLE
Sample: SRS24198652
BioProject: PRJNA1229430
BioSample: SAMN47128439
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR32510408 34769069 1773222519 560.0 SRA

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Data Files (4)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR32510408_GSM8818449 RIP-Seq 560.0 MB link
— SRR32510409_GSM8818448 RIP-Seq 532.0 MB link
— SRR32510410_GSM8818447 RIP-Seq 439.0 MB link
— SRR32510411_GSM8818446 RIP-Seq 417.0 MB link