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GSE328331

GSE GEO Potentially related
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Modulation of the DNA/RNA Binding Protein ARID5A Regulates Microglial Activation and Response [RIP-Seq]

Organism: Homo sapiens
Platform: Illumina
Status: manual

Summary

RNA binding proteins (RBPs) shape cellular function in health and disease. However, the function of RBPs expressed specifically in the central nervous system (CNS) remain uncharacterized. Within the CNS, we identify ARID5A as a microglial-specific RBP and integrate multi-omics analyses of ARID5A's RNA, DNA, and protein interactions to uncover its RNA-mediated regulation of microglial functions. We show ARID5A regulates the splicing and translation of its RNA targets, many of which are integral to microglial functions. We find ARID5A modulates cytokine secretion, lysosome activity, and iron accumulation, as well as ferroptosis sensitivity in microglia and co-cultured neurons. We illustrate the neuroprotective potential of ARID5A modulation, in which knockdown restored dysregulated functions in TREM2 mutant microglia. Our results highlight the potential of leveraging ARID5A-RNA interactions to restore dysregulated pathways in neurodegeneration.

Analysis page is available for GSE328331.
GEO Samples (8)

SRA Experiments (8) and Runs (8)

Total: 33520 MB
SRX32993301 SRP692676 RIP-Seq PAIRED
Sample: SRS28828952
BioProject: PRJNA1454794
BioSample: SAMN57320464
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147817 39615489 8002328778 2687.0 SRA
SRX32993302 SRP692676 RIP-Seq PAIRED
Sample: SRS28828953
BioProject: PRJNA1454794
BioSample: SAMN57320463
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147816 40487258 8178426116 2744.0 SRA
SRX32993303 SRP692676 RIP-Seq PAIRED
Sample: SRS28828954
BioProject: PRJNA1454794
BioSample: SAMN57320462
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147815 66520216 13437083632 4385.0 SRA
SRX32993304 SRP692676 RIP-Seq PAIRED
Sample: SRS28828955
BioProject: PRJNA1454794
BioSample: SAMN57320461
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147814 72701114 14685625028 4905.0 SRA
SRX32993305 SRP692676 RIP-Seq PAIRED
Sample: SRS28828956
BioProject: PRJNA1454794
BioSample: SAMN57320460
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147813 66391233 13411029066 4488.0 SRA
SRX32993306 SRP692676 RIP-Seq PAIRED
Sample: SRS28828957
BioProject: PRJNA1454794
BioSample: SAMN57320459
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147812 59075062 11933162524 3963.0 SRA
SRX32993307 SRP692676 RIP-Seq PAIRED
Sample: SRS28828958
BioProject: PRJNA1454794
BioSample: SAMN57320458
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147811 119877564 24215267928 8097.0 SRA
SRX32993308 SRP692676 RIP-Seq PAIRED
Sample: SRS28828959
BioProject: PRJNA1454794
BioSample: SAMN57320457
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR38147810 33463195 6759565390 2251.0 SRA

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Data Files (8)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR38147810_GSM9679286 RIP-Seq 2.2 GB link
— SRR38147811_GSM9679285 RIP-Seq 7.9 GB link
— SRR38147812_GSM9679284 RIP-Seq 3.9 GB link
— SRR38147813_GSM9679283 RIP-Seq 4.4 GB link
— SRR38147814_GSM9679282 RIP-Seq 4.8 GB link
— SRR38147815_GSM9679281 RIP-Seq 4.3 GB link
— SRR38147816_GSM9679280 RIP-Seq 2.7 GB link
— SRR38147817_GSM9679279 RIP-Seq 2.6 GB link