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GSE254208

GSE GEO
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Inhibition of RNA splicing triggers CHMP7 nuclear entry impacting TDP-43 function and leading to onset of ALS (RNA-Seq).

Organism: Homo sapiens
Platform: Illumina
Status: manual

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GSE254210

Summary

Amyotrophic lateral sclerosis (ALS) has been linked to nucleoporin loss in patient neurons. In the ESCRT-III pathway, CHMP7 protein accumulation in the nucleus triggers ALS by damaging nuclear pores and disrupting cellular transport. Genes controlling CHMP7's nuclear presence remain unidentified. Our Craft-ID analysis revealed that RNA binding proteins involved in assembling small nuclear ribonucleoprotein particles control CHMP7 nuclear localization. This regulation ultimately impacts splicing processes and can lead to pore injury. Using IP-MS, we discovered that CHMP7 interacts with the survival of motor neuron (SMN) complex (SmD1-3, Gemins), mediated by U1 snRNP and direct interactions between CHMP7. Reducing expression of the core SMN complex component SmD1 was observed in ALS iPSC- Motor Neurons (MNs), affecting CHMP7 localization. However, restoring its levels can rescue the cytoplasmic localization of CHMP7 in sALS iPSC-MNs. Our discoveries hint at an early ALS pathway involving SMN core complex dysregulation, influencing disease onset.

Analysis page is available for GSE254208.

Supplementary Files (4)

GSE254208_down_regulated.csv.gz Download
GSE254208_down_regulated_sig.csv.gz Download
GSE254208_up_regulated.csv.gz Download
GSE254208_up_regulated_sig.csv.gz Download
GEO Samples (4)

SRA Experiments (4) and Runs (4)

Total: 46668 MB
SRX23392132 SRP485938 RNA-Seq SINGLE
Sample: SRS20253057
BioProject: PRJNA1069014
BioSample: SAMN39609881
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27726256 4537581 458295681 152.0 SRA
SRX23392133 SRP485938 RNA-Seq SINGLE
Sample: SRS20253058
BioProject: PRJNA1069014
BioSample: SAMN39609880
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27726255 1377723264 139150049664 45252.0 SRA
SRX23392134 SRP485938 RNA-Seq SINGLE
Sample: SRS20253059
BioProject: PRJNA1069014
BioSample: SAMN39609879
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27726254 21652734 2186926134 700.0 SRA
SRX23392135 SRP485938 RNA-Seq SINGLE
Sample: SRS20253060
BioProject: PRJNA1069014
BioSample: SAMN39609878
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27726253 18416134 1860029534 564.0 SRA

Data Files (4)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR27726253_GSM8036055 RNA-Seq 564.0 MB link
— SRR27726254_GSM8036054 RNA-Seq 700.0 MB link
— SRR27726255_GSM8036053 RNA-Seq 44.2 GB link
— SRR27726256_GSM8036052 RNA-Seq 152.0 MB link