#!/usr/bin/env bash # Bulk download script for GSE286096 # Generated from Yeo Lab Knowledgebase # Total files: 134 OUTDIR=GSE286096 mkdir -p "$OUTDIR" cd "$OUTDIR" # --- GEO supplementary files --- wget -nc ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE286nnn/GSE286096/suppl/GSE286096_QC_metrics.txt.gz -O GSE286096_QC_metrics.txt.gz wget -nc ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE286nnn/GSE286096/suppl/GSE286096_raw_counts_All_Samples.txt.gz -O GSE286096_raw_counts_All_Samples.txt.gz # --- SRA run files --- # Tip: use 'fasterq-dump' from SRA Toolkit for FASTQ conversion # with optional renaming to original submitted FASTQ names. # Set to 1 to rename SRR outputs (e.g. SRR_1.fastq.gz -> sample_R1.fastq.gz) RENAME_SRA_TO_ORIGINAL=1 _compress_if_exists() { local stem="$1" if [ -f "${stem}.fastq" ]; then gzip -f "${stem}.fastq" echo "${stem}.fastq.gz" return 0 fi if [ -f "${stem}.fq" ]; then gzip -f "${stem}.fq" echo "${stem}.fq.gz" return 0 fi return 1 } # Option A: Download via SRA Toolkit (recommended) fasterq-dump --split-files SRR31926192 gz1="$(_compress_if_exists SRR31926192_1 || true)" gz2="$(_compress_if_exists SRR31926192_2 || true)" gzs="$(_compress_if_exists SRR31926192 || true)" fasterq-dump --split-files SRR31926193 gz1="$(_compress_if_exists SRR31926193_1 || true)" gz2="$(_compress_if_exists SRR31926193_2 || true)" gzs="$(_compress_if_exists SRR31926193 || true)" fasterq-dump --split-files SRR31926194 gz1="$(_compress_if_exists SRR31926194_1 || true)" gz2="$(_compress_if_exists SRR31926194_2 || true)" gzs="$(_compress_if_exists SRR31926194 || true)" fasterq-dump --split-files SRR31926195 gz1="$(_compress_if_exists SRR31926195_1 || true)" gz2="$(_compress_if_exists SRR31926195_2 || true)" gzs="$(_compress_if_exists SRR31926195 || true)" fasterq-dump --split-files SRR31926196 gz1="$(_compress_if_exists SRR31926196_1 || true)" gz2="$(_compress_if_exists SRR31926196_2 || true)" gzs="$(_compress_if_exists SRR31926196 || true)" fasterq-dump --split-files SRR31926197 gz1="$(_compress_if_exists SRR31926197_1 || true)" gz2="$(_compress_if_exists SRR31926197_2 || true)" gzs="$(_compress_if_exists SRR31926197 || true)" fasterq-dump --split-files SRR31926198 gz1="$(_compress_if_exists SRR31926198_1 || true)" gz2="$(_compress_if_exists SRR31926198_2 || true)" gzs="$(_compress_if_exists SRR31926198 || true)" fasterq-dump --split-files SRR31926199 gz1="$(_compress_if_exists SRR31926199_1 || true)" gz2="$(_compress_if_exists SRR31926199_2 || true)" gzs="$(_compress_if_exists SRR31926199 || true)" fasterq-dump --split-files SRR31926200 gz1="$(_compress_if_exists SRR31926200_1 || true)" gz2="$(_compress_if_exists SRR31926200_2 || true)" gzs="$(_compress_if_exists SRR31926200 || true)" fasterq-dump --split-files SRR31926201 gz1="$(_compress_if_exists SRR31926201_1 || true)" gz2="$(_compress_if_exists SRR31926201_2 || true)" gzs="$(_compress_if_exists SRR31926201 || true)" fasterq-dump --split-files SRR31926202 gz1="$(_compress_if_exists SRR31926202_1 || true)" gz2="$(_compress_if_exists SRR31926202_2 || true)" gzs="$(_compress_if_exists SRR31926202 || true)" fasterq-dump --split-files SRR31926203 gz1="$(_compress_if_exists SRR31926203_1 || true)" gz2="$(_compress_if_exists SRR31926203_2 || true)" gzs="$(_compress_if_exists SRR31926203 || true)" fasterq-dump --split-files SRR31926204 gz1="$(_compress_if_exists SRR31926204_1 || true)" gz2="$(_compress_if_exists SRR31926204_2 || true)" gzs="$(_compress_if_exists SRR31926204 || true)" fasterq-dump --split-files SRR31926205 gz1="$(_compress_if_exists SRR31926205_1 || true)" gz2="$(_compress_if_exists SRR31926205_2 || true)" gzs="$(_compress_if_exists SRR31926205 || true)" fasterq-dump --split-files SRR31926206 gz1="$(_compress_if_exists SRR31926206_1 || true)" gz2="$(_compress_if_exists SRR31926206_2 || true)" gzs="$(_compress_if_exists SRR31926206 || true)" fasterq-dump --split-files SRR31926207 gz1="$(_compress_if_exists SRR31926207_1 || true)" gz2="$(_compress_if_exists SRR31926207_2 || true)" gzs="$(_compress_if_exists SRR31926207 || true)" fasterq-dump --split-files SRR31926208 gz1="$(_compress_if_exists SRR31926208_1 || true)" gz2="$(_compress_if_exists SRR31926208_2 || true)" gzs="$(_compress_if_exists SRR31926208 || true)" fasterq-dump --split-files SRR31926209 gz1="$(_compress_if_exists SRR31926209_1 || true)" gz2="$(_compress_if_exists SRR31926209_2 || true)" gzs="$(_compress_if_exists SRR31926209 || true)" fasterq-dump --split-files SRR31926210 gz1="$(_compress_if_exists SRR31926210_1 || true)" gz2="$(_compress_if_exists SRR31926210_2 || true)" gzs="$(_compress_if_exists SRR31926210 || true)" fasterq-dump --split-files SRR31926211 gz1="$(_compress_if_exists SRR31926211_1 || true)" gz2="$(_compress_if_exists SRR31926211_2 || true)" gzs="$(_compress_if_exists SRR31926211 || true)" fasterq-dump --split-files SRR31926212 gz1="$(_compress_if_exists SRR31926212_1 || true)" gz2="$(_compress_if_exists SRR31926212_2 || true)" gzs="$(_compress_if_exists SRR31926212 || true)" fasterq-dump --split-files SRR31926213 gz1="$(_compress_if_exists SRR31926213_1 || true)" gz2="$(_compress_if_exists SRR31926213_2 || true)" gzs="$(_compress_if_exists SRR31926213 || true)" fasterq-dump --split-files SRR31926214 gz1="$(_compress_if_exists SRR31926214_1 || true)" gz2="$(_compress_if_exists SRR31926214_2 || true)" gzs="$(_compress_if_exists SRR31926214 || true)" fasterq-dump --split-files SRR31926215 gz1="$(_compress_if_exists SRR31926215_1 || true)" gz2="$(_compress_if_exists SRR31926215_2 || true)" gzs="$(_compress_if_exists SRR31926215 || true)" fasterq-dump --split-files SRR31926216 gz1="$(_compress_if_exists SRR31926216_1 || true)" gz2="$(_compress_if_exists SRR31926216_2 || true)" gzs="$(_compress_if_exists SRR31926216 || true)" fasterq-dump --split-files SRR31926217 gz1="$(_compress_if_exists SRR31926217_1 || true)" gz2="$(_compress_if_exists SRR31926217_2 || true)" gzs="$(_compress_if_exists SRR31926217 || true)" fasterq-dump --split-files SRR31926218 gz1="$(_compress_if_exists SRR31926218_1 || true)" gz2="$(_compress_if_exists SRR31926218_2 || true)" gzs="$(_compress_if_exists SRR31926218 || true)" fasterq-dump --split-files SRR31926219 gz1="$(_compress_if_exists SRR31926219_1 || true)" gz2="$(_compress_if_exists SRR31926219_2 || true)" gzs="$(_compress_if_exists SRR31926219 || true)" fasterq-dump --split-files SRR31926220 gz1="$(_compress_if_exists SRR31926220_1 || true)" gz2="$(_compress_if_exists SRR31926220_2 || true)" gzs="$(_compress_if_exists SRR31926220 || true)" fasterq-dump --split-files SRR31926221 gz1="$(_compress_if_exists SRR31926221_1 || true)" gz2="$(_compress_if_exists SRR31926221_2 || true)" gzs="$(_compress_if_exists SRR31926221 || true)" fasterq-dump --split-files SRR31926222 gz1="$(_compress_if_exists SRR31926222_1 || true)" gz2="$(_compress_if_exists SRR31926222_2 || true)" gzs="$(_compress_if_exists SRR31926222 || true)" fasterq-dump --split-files SRR31926223 gz1="$(_compress_if_exists SRR31926223_1 || true)" gz2="$(_compress_if_exists SRR31926223_2 || true)" gzs="$(_compress_if_exists SRR31926223 || true)" fasterq-dump --split-files SRR31926224 gz1="$(_compress_if_exists SRR31926224_1 || true)" gz2="$(_compress_if_exists SRR31926224_2 || true)" gzs="$(_compress_if_exists SRR31926224 || true)" fasterq-dump --split-files SRR31926225 gz1="$(_compress_if_exists SRR31926225_1 || true)" gz2="$(_compress_if_exists SRR31926225_2 || true)" gzs="$(_compress_if_exists SRR31926225 || true)" fasterq-dump --split-files SRR31926226 gz1="$(_compress_if_exists SRR31926226_1 || true)" gz2="$(_compress_if_exists SRR31926226_2 || true)" gzs="$(_compress_if_exists SRR31926226 || true)" fasterq-dump --split-files SRR31926227 gz1="$(_compress_if_exists SRR31926227_1 || true)" gz2="$(_compress_if_exists SRR31926227_2 || true)" gzs="$(_compress_if_exists SRR31926227 || true)" fasterq-dump --split-files SRR31926228 gz1="$(_compress_if_exists SRR31926228_1 || true)" gz2="$(_compress_if_exists SRR31926228_2 || true)" gzs="$(_compress_if_exists SRR31926228 || true)" fasterq-dump --split-files SRR31926229 gz1="$(_compress_if_exists SRR31926229_1 || true)" gz2="$(_compress_if_exists SRR31926229_2 || true)" gzs="$(_compress_if_exists SRR31926229 || true)" fasterq-dump --split-files SRR31926230 gz1="$(_compress_if_exists SRR31926230_1 || true)" gz2="$(_compress_if_exists SRR31926230_2 || true)" gzs="$(_compress_if_exists SRR31926230 || true)" fasterq-dump --split-files SRR31926231 gz1="$(_compress_if_exists SRR31926231_1 || true)" gz2="$(_compress_if_exists SRR31926231_2 || true)" gzs="$(_compress_if_exists SRR31926231 || true)" fasterq-dump --split-files SRR31926232 gz1="$(_compress_if_exists SRR31926232_1 || true)" gz2="$(_compress_if_exists SRR31926232_2 || true)" gzs="$(_compress_if_exists SRR31926232 || true)" fasterq-dump --split-files SRR31926233 gz1="$(_compress_if_exists SRR31926233_1 || true)" gz2="$(_compress_if_exists SRR31926233_2 || true)" gzs="$(_compress_if_exists SRR31926233 || true)" fasterq-dump --split-files SRR31926234 gz1="$(_compress_if_exists SRR31926234_1 || true)" gz2="$(_compress_if_exists SRR31926234_2 || true)" gzs="$(_compress_if_exists SRR31926234 || true)" fasterq-dump --split-files SRR31926235 gz1="$(_compress_if_exists SRR31926235_1 || true)" gz2="$(_compress_if_exists SRR31926235_2 || true)" gzs="$(_compress_if_exists SRR31926235 || true)" fasterq-dump --split-files SRR31926236 gz1="$(_compress_if_exists SRR31926236_1 || true)" gz2="$(_compress_if_exists SRR31926236_2 || true)" gzs="$(_compress_if_exists SRR31926236 || true)" fasterq-dump --split-files SRR31926237 gz1="$(_compress_if_exists SRR31926237_1 || true)" gz2="$(_compress_if_exists SRR31926237_2 || true)" gzs="$(_compress_if_exists SRR31926237 || true)" fasterq-dump --split-files SRR31926238 gz1="$(_compress_if_exists SRR31926238_1 || true)" gz2="$(_compress_if_exists SRR31926238_2 || true)" gzs="$(_compress_if_exists SRR31926238 || true)" fasterq-dump --split-files SRR31926239 gz1="$(_compress_if_exists SRR31926239_1 || true)" gz2="$(_compress_if_exists SRR31926239_2 || true)" gzs="$(_compress_if_exists SRR31926239 || true)" fasterq-dump --split-files SRR31926240 gz1="$(_compress_if_exists SRR31926240_1 || true)" gz2="$(_compress_if_exists SRR31926240_2 || true)" gzs="$(_compress_if_exists SRR31926240 || true)" fasterq-dump --split-files SRR31926241 gz1="$(_compress_if_exists SRR31926241_1 || true)" gz2="$(_compress_if_exists SRR31926241_2 || true)" gzs="$(_compress_if_exists SRR31926241 || true)" fasterq-dump --split-files SRR31926242 gz1="$(_compress_if_exists SRR31926242_1 || true)" gz2="$(_compress_if_exists SRR31926242_2 || true)" gzs="$(_compress_if_exists SRR31926242 || true)" fasterq-dump --split-files SRR31926243 gz1="$(_compress_if_exists SRR31926243_1 || true)" gz2="$(_compress_if_exists SRR31926243_2 || true)" gzs="$(_compress_if_exists SRR31926243 || true)" fasterq-dump --split-files SRR31926244 gz1="$(_compress_if_exists SRR31926244_1 || true)" gz2="$(_compress_if_exists SRR31926244_2 || true)" gzs="$(_compress_if_exists SRR31926244 || true)" fasterq-dump --split-files SRR31926245 gz1="$(_compress_if_exists SRR31926245_1 || true)" gz2="$(_compress_if_exists SRR31926245_2 || true)" gzs="$(_compress_if_exists SRR31926245 || true)" fasterq-dump --split-files SRR31926246 gz1="$(_compress_if_exists SRR31926246_1 || true)" gz2="$(_compress_if_exists SRR31926246_2 || true)" gzs="$(_compress_if_exists SRR31926246 || true)" fasterq-dump --split-files SRR31926247 gz1="$(_compress_if_exists SRR31926247_1 || true)" gz2="$(_compress_if_exists SRR31926247_2 || true)" gzs="$(_compress_if_exists SRR31926247 || true)" fasterq-dump --split-files SRR31926248 gz1="$(_compress_if_exists SRR31926248_1 || true)" gz2="$(_compress_if_exists SRR31926248_2 || true)" gzs="$(_compress_if_exists SRR31926248 || true)" fasterq-dump --split-files SRR31926249 gz1="$(_compress_if_exists SRR31926249_1 || true)" gz2="$(_compress_if_exists SRR31926249_2 || true)" gzs="$(_compress_if_exists SRR31926249 || true)" fasterq-dump --split-files SRR31926250 gz1="$(_compress_if_exists SRR31926250_1 || true)" gz2="$(_compress_if_exists SRR31926250_2 || true)" gzs="$(_compress_if_exists SRR31926250 || true)" fasterq-dump --split-files SRR31926251 gz1="$(_compress_if_exists SRR31926251_1 || true)" gz2="$(_compress_if_exists SRR31926251_2 || true)" gzs="$(_compress_if_exists SRR31926251 || true)" fasterq-dump --split-files SRR31926252 gz1="$(_compress_if_exists SRR31926252_1 || true)" gz2="$(_compress_if_exists SRR31926252_2 || true)" gzs="$(_compress_if_exists SRR31926252 || true)" fasterq-dump --split-files SRR31926253 gz1="$(_compress_if_exists SRR31926253_1 || true)" gz2="$(_compress_if_exists SRR31926253_2 || true)" gzs="$(_compress_if_exists SRR31926253 || true)" fasterq-dump --split-files SRR31926254 gz1="$(_compress_if_exists SRR31926254_1 || true)" gz2="$(_compress_if_exists SRR31926254_2 || true)" gzs="$(_compress_if_exists SRR31926254 || true)" fasterq-dump --split-files SRR31926255 gz1="$(_compress_if_exists SRR31926255_1 || true)" gz2="$(_compress_if_exists SRR31926255_2 || true)" gzs="$(_compress_if_exists SRR31926255 || true)" fasterq-dump --split-files SRR31926256 gz1="$(_compress_if_exists SRR31926256_1 || true)" gz2="$(_compress_if_exists SRR31926256_2 || true)" gzs="$(_compress_if_exists SRR31926256 || true)" fasterq-dump --split-files SRR31926257 gz1="$(_compress_if_exists SRR31926257_1 || true)" gz2="$(_compress_if_exists SRR31926257_2 || true)" gzs="$(_compress_if_exists SRR31926257 || true)" # Option B: Direct download (larger .sra files) curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926192/SRR31926192.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926193/SRR31926193.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926194/SRR31926194.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926195/SRR31926195.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926196/SRR31926196.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926197/SRR31926197.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926198/SRR31926198.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926199/SRR31926199.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926200/SRR31926200.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926201/SRR31926201.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926202/SRR31926202.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926203/SRR31926203.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926204/SRR31926204.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926205/SRR31926205.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926206/SRR31926206.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926207/SRR31926207.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926208/SRR31926208.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926209/SRR31926209.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926210/SRR31926210.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926211/SRR31926211.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926212/SRR31926212.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926213/SRR31926213.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926214/SRR31926214.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926215/SRR31926215.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926216/SRR31926216.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926217/SRR31926217.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926218/SRR31926218.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926219/SRR31926219.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926220/SRR31926220.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926221/SRR31926221.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926222/SRR31926222.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926223/SRR31926223.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926224/SRR31926224.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926225/SRR31926225.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926226/SRR31926226.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926227/SRR31926227.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926228/SRR31926228.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926229/SRR31926229.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926230/SRR31926230.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926231/SRR31926231.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926232/SRR31926232.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926233/SRR31926233.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926234/SRR31926234.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926235/SRR31926235.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926236/SRR31926236.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926237/SRR31926237.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926238/SRR31926238.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926239/SRR31926239.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926240/SRR31926240.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926241/SRR31926241.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926242/SRR31926242.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926243/SRR31926243.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926244/SRR31926244.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926245/SRR31926245.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926246/SRR31926246.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926247/SRR31926247.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926248/SRR31926248.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926249/SRR31926249.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926250/SRR31926250.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926251/SRR31926251.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926252/SRR31926252.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926253/SRR31926253.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926254/SRR31926254.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926255/SRR31926255.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926256/SRR31926256.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926257/SRR31926257.lite.1 # --- Additional data files --- curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926192/SRR31926192.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926193/SRR31926193.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926194/SRR31926194.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926195/SRR31926195.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926196/SRR31926196.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926197/SRR31926197.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926198/SRR31926198.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926199/SRR31926199.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926200/SRR31926200.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926201/SRR31926201.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926202/SRR31926202.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926203/SRR31926203.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926204/SRR31926204.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926205/SRR31926205.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926206/SRR31926206.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926207/SRR31926207.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926208/SRR31926208.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926209/SRR31926209.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926210/SRR31926210.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926211/SRR31926211.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926212/SRR31926212.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926213/SRR31926213.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926214/SRR31926214.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926215/SRR31926215.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926216/SRR31926216.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926217/SRR31926217.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926218/SRR31926218.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926219/SRR31926219.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926220/SRR31926220.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926221/SRR31926221.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926222/SRR31926222.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926223/SRR31926223.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926224/SRR31926224.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926225/SRR31926225.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926226/SRR31926226.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926227/SRR31926227.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926228/SRR31926228.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926229/SRR31926229.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926230/SRR31926230.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926231/SRR31926231.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926232/SRR31926232.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926233/SRR31926233.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926234/SRR31926234.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926235/SRR31926235.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926236/SRR31926236.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926237/SRR31926237.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926238/SRR31926238.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926239/SRR31926239.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926240/SRR31926240.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926241/SRR31926241.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926242/SRR31926242.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926243/SRR31926243.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926244/SRR31926244.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926245/SRR31926245.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926246/SRR31926246.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926247/SRR31926247.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926248/SRR31926248.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926249/SRR31926249.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926250/SRR31926250.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926251/SRR31926251.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926252/SRR31926252.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926253/SRR31926253.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926254/SRR31926254.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926255/SRR31926255.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926256/SRR31926256.lite.1 curl -L -O -C - https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1307/SRR031/31926/SRR31926257/SRR31926257.lite.1 echo "Download complete. Files saved to $OUTDIR"