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  1. Engineered U1 snRNAs to modulate alternatively spliced exons.

    Methods (San Diego, Calif.) · 2022 · 205: 140-148

    Alternative splicing accounts for a considerable portion of transcriptomic diversity, as most protein-coding genes are spliced into multiple mRNA isoforms. However, errors in splicing patterns can give rise to mis-splicing with pathological consequences, such as the congenital diseases familial dysautonomia, …

    PMID 35764245 DOI ↗

Datasets 12

ENCSR119AFY ENCSR · ENCODE

eCLIP control experiment on K562 against FASTKD2

Homo sapiens

ENCSR608IAI ENCSR · ENCODE

shRNA knockdown against FASTKD2 in K562 cells followed by RNA-seq. (FASTKD2 BGKLV13)

Homo sapiens

ENCSR716WZH ENCSR · ENCODE

shRNA knockdown against FASTKD2 in HepG2 cells followed by RNA-seq. (FASTKD2 BGHLV14)

Homo sapiens

ENCSR671FKF ENCSR · ENCODE

eCLIP control experiment on HepG2 against FASTKD2

Homo sapiens

ENCSR887FHF ENCSR · ENCODE

eCLIP experiment on K562 against FASTKD2

Homo sapiens

ENCSR023UHL ENCSR · ENCODE

eCLIP experiment on HepG2 against FASTKD2

Homo sapiens

ENCSR728BOL ENCSR · ENCODE

RNA-seq on HepG2 cells treated with an shRNA knockdown against FASTKD1. (FASTKD1-BGHLV22)

Homo sapiens

GSE112353 GSE · GEO

Active ribosome profiling with RiboLace and standard ribosome profiling in HEK-293 cells

Homo sapiens · GPL16791

GSE210263 GSE · GEO

Transcriptomic profiles of muscular dystrophy with myositis (mdm) in extensor digitorum longus, psoas, and soleus muscles from mice

Mus musculus · GPL19057

GSE157049 GSE · GEO

RNA-seq of metformin treatment in liver in WT, Raptor Ser-Ala mutant, Tsc2-null, Raptor mutant;Tsc2-null, and Ampk-null

Mus musculus · GPL24247

GSE215252 GSE · GEO

FLARE: A fast and flexible peak-calling pipeline for identifying RNA editing foci

Homo sapiens · GPL24676

GSE213867 GSE · GEO

Skipper analysis of RNA-protein interactions highlights depletion of genetic variation in translation factor binding sites

Homo sapiens · GPL24676

Analyses 1

GSE215252 Processing Pipeline

GSE215252 · 5 steps · RNA-Seq · code_examples

FLARE: a fast and flexible workflow for identifying RNA editing foci. (2023)