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3 results for “seCLIP”

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  1. Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.

    Nature protocols · 2022 · 17(5): 1223-1265

    Discovery of interaction sites between RNA-binding proteins (RBPs) and their RNA targets plays a critical role in enabling our understanding of how these RBPs control RNA processing and regulation. Cross-linking and immunoprecipitation (CLIP) provides a generalizable, transcriptome-wide method by which …

    PMID 35322209 DOI ↗

  2. Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

    Methods in molecular biology (Clifton, N.J.) · 2017 · 1648: 177-200

    Profiling of RNA binding protein targets in vivo provides critical insights into the mechanistic roles they play in regulating RNA processing. The enhanced crosslinking and immunoprecipitation (eCLIP) methodology provides a framework for robust, reproducible identification of transcriptome-wide protein-RNA interactions, with …

    PMID 28766298 DOI ↗

  3. Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

    Methods in molecular biology (Clifton, N.J.) · 2017 · 1648: E1

    PMID 29230720 DOI ↗

Datasets 2

GSE124714 GSE · GEO

The mRNA decay factor CAR-1 regulates axon regeneration via mitochondrial calcium dynamics

6239 · GPL13657

GSE180686 GSE · GEO

Transcriptome-wide identification of RNA binding protein binding sites using seCLIP-seq

Homo sapiens · GPL24676

Analyses 1

GSE180686 Processing Pipeline

GSE180686 · 20 steps · RIP-Seq · code_examples

Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq. (2022)