GSE290282 RNA-seq Data Processing

RNA-seq geo_data_processing 3 steps

Publication

Large-scale tethered screen of RNA-binding proteins reveals novel regulators of poly(A) site selection.

Molecular cell (2026) — PMID 42361791

Dataset

GSE290282

Large-scale tethered screen of RNA-binding proteins reveals novel regulators of poly(A) site selection [RNA-Seq]

Warning: Pipeline descriptions and code snippets may be inferred or AI-generated. Use them only as a starting point to guide analysis, and validate before use.

Processing Steps

Generate Jupyter Notebook
  1. 1

    Quality of reads were assessed using fastqc.

    FastQC
  2. 2

    Reads were trimmed.

  3. 3

    Reads were aligned to hg38 reference and quantified with salmon.

    Salmon
Raw Source Text 
Quality of reads were assessed using fastqc.
Reads were trimmed.
Reads were aligned to hg38 reference and quantified with salmon.
Assembly: hg38
Supplementary files format and content: quant.sf files contain transcript quantifications
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